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Description

This is a Java content-based image retrieval software components. It can be runned independantly or connected to a Cytomine server. Content-based image retrieval (CBIR), also known as query by image content (QBIC) and content-based visual information retrieval (CBVIR) is the application of computer vision techniques to the image retrieval problem, that is, the problem of searching for digital images in large databases. Content-based" means that the search algorithm analyzes the contents of the image rather than the metadata such as keywords, tags, or descriptions associated with the image. The term "content" in this context might refer to colors, shapes, textures, or any other information that can be derived from the image itself. The CBIRetrieval library is: Incremental: You can add new images all over the time. Scalable: Run as many server as you want. Client performs search on all servers. Flexible: Run as a simple app (command line) or use the JAR in your own JVM app/server (java import) Opensource/Free: Apache 2.0 CBIRetrieval is a java library for CBIR, CBIRest is a server with a REST HTTP API with CBIRetrieval embedded. If you want to connect a software/webapp with a CBIR engine, you should use CBIRest. This is a fast multi-threaded and noSQL implementation of the algorithm published in: Incremental Indexing and Distributed Image Search using Shared Randomized Vocabularies Marée, Raphaël; Denis, Philippe; Wehenkel, Louis; Geurts, Pierre,in ACM Proceedings MIR 2010 (2010, March). It was applied on histology images and radiology images.

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Description

Matlab implementation (2014) of Local Binary Pattern. Used for texture image analysis with insensitivity to local average value. Good explanation here: http://www.ee.oulu.fi/research/imag/mvg/files/pdf/ICCV2009_tutorial.pdf

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Description

Nuget package for conversion between color spaces and calculation of color differences. Color spaces available: -CMY -CMYK -HSL -HSB -HSV -CIE L*a*b* -Hunter LAB -L*C*h* -L*u*v* -RGB -XYZ -YXY Color differences available: -CIE76 -CMC l:c -CIE94 -CIE2000. Online example at http://colormine.org/color-converter

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Description

ImageJ macro for the morphometry of neurites. > NeurphologyJ; it is capable of automatically quantifying neuronal morphology such as soma number and size, neurite length, neurite ending points and attachment points. NeurphologyJ is implemented as a plugin to ImageJ, an open-source Java-based image-processing and analysis platform.

 

Description

The Virtual Brain Explorer (ViBE-Z) is a software that automatically maps gene expression data with cellular resolution to a 3D standard larval zebrafish (Danio rerio) brain. It automatically detects 14 predefined anatomical landmarks for aligning data. It also offers a database and atlas. The ViBE-Z database, atlas and software are provided via a web interface. A data preparation step is needed in order to provide the right input data and format.

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