Commercial

This workflow presents single-particle tracking in Fiji using Track-Mate, and track motility analysis in MATLAB using @msdanalyzer. 

Daybook 2 is the analysis software linked to argoligth slides. It tests the performance of microscopes on various levels: illumination homogeneity, field distortion, lateral resolving power, stage drift, chromatic aberrations, intensity response... It works with various file formats but requires the use of an argolight test slide. 

AssayScope is an intuitive application dedicated to large scale image processing and data analysis. It is meant for histology, cell culture (2D, 3D, 2D+t) and phenotypic analysis. 

IDE for JVM

Every aspect of IntelliJ IDEA is specifically designed to maximize developer productivity. Together, the powerful static code analysis and ergonomic design make development not only productive but also an enjoyable experience.

It can be seen as an alternative to Eclipse for example for java based development. It exists in both a commercial and a free and open source version.