A workflow is a set of components assembled in some specific order to
for addressing a biological question. Workflows can be a combination of components from the same or different software packages using several scripts and manual steps.
MATLAB, for advanced analysts. Slides, Scripts, Reproduction of results & deconstruction. Uniquely designed analtical approaches towards understanding cell cluster movements, based on stress / cell migration analysis.
ImageJ & R, for advanced analysts. Slides, Scripts, Reproduction of results & deconstruction. Segmentation of filopodia (thin filamentous structure) and analysis of their shape and movements to characterize phenotypes.
MATLAB, CellProfiler, Advanced Cell Classifier, for advanced analysts. Slides, Scripts, Reproduction of results & deconstruction. We aim to implement an image-based analysis of a biological system by profiling the phenotipic response of a cancer cell line following perturbation with a small-molecule compound library
ImageJ, for those with GUI knowledge but without scripting knowledge
ImageJ, for those with GUI knowledge but without scripting knowledge
