Windows

This plugin comes with Fiji

This plugin can be used to estimate nonlinear distortions induced by the image acquisition process[1] . It does not require special calibration samples, but needs sufficient overlapping image areas with preferably high contrast. For further information on how to best arrange calibration images please see the documentation.

a dynamic version of the Reslice command.

Bundled with Fiji.

2D Image registration method based on elastic deformations represented by B-splines.

An ImageJ plugin for manually tracking objects by mouse clicking. 

This plugin is bundled with Fiji.