Automated

WIS-NeuroMath - is a software tool for automated analysis and quantification of fluorescent microscopy images of Nerve cells, in both in vivo and in vitro preparations. It allows for accurate detection of neurites in challenging images. Following neurite detection, different types of processing can be carried: Cell Morphology of cultured neurons, Neurite Length Analysis and Ganglion Explant Analysis. Usefull also for angiogenesis analysis.

EnhanceEdges enhances or identifies edges in an image, which can improve object identification or other downstream image processing.

This plugin threshold an image using the Maximum Entropy algorithm, which aims at maximizing the inter-class entropy. Entropy is defined as -sum(p.*log2(p)), where p contains the histogram bin counts. This thresholding is very useful to segment images with few bright objects on large dark background. In ImageJ/FIJI you can acces this tool in Image->Adjust->Threshold and choose in the list In Aphelion, you can access this tool in Seglmentation->Threshold-> AphImgEntropyThreshold