video tutorial on 3D vessel segmentation of synchrotron phase contrast tomography

Bioimage Analyst
Developer

In this tutorial video, a coronary arterial tree is used as the demo example to show in detail how the semi-automatic segmentation workflow, Carving from the open-source image analysis software ilastik, can be used. Tips on how and why a preprocessing is done, as well as parameter settings are provided.

EnhanceEdges

Description

EnhanceEdges enhances or identifies edges in an image, which can improve object identification or other downstream image processing.

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Enhance Local Contrast (CLAHE)

has function
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EnhanceOrSuppressFeatures

Description

EnhanceOrSuppressFeatures enhances or suppresses certain image features (such as speckles, ring shapes, and neurites), which can improve subsequent identification of objects.

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