Semi-automated

Analyze 12.0 is a set of image processing, visualization and analysis tools that provides users access to a breadth of essential post-processing functions critical for innovative research. Analyze 12.0 provides users with all the key display, editing, processing, registration, and measurement tools needed to realize their research goals in a single multifaceted software package. Analyze 12.0 is open-ended, allowing for the application of its tools to novel and emerging research.

A toolbox that contains Matlab routines for computing the forward and backward generalized Riesz-wavelet transform of high order is provided. It includes utilities for orientation computation, coefficients steering, basic denoising, frame learning.

NuclearQuant is a QuantCenter module. It is designed for cell nuclei detection and quantification of IHC stained samples. NuclearQuant measures several morphological features besides stain intensity. The cell nuclei classification and the final score are calculated by the intensity score and the proportion score.

This version replaces the old Arrow_.class tool that was present in Fiji before. The main changes are the ability to draw the arrow as a floating selection, and to tune its shape.

Warning: Since ImageJ version 1.43n, a similar tool, made by Wayne Rasband, does a similar thing from the ImageJ core, see here.

This Matlab code is the 3D extension of the Generalized Riesz-Wavelet Toolbox for Matlab.