Workflow

A workflow is a set of components assembled in some specific order to

  1. Measure and estimate some numerical parameters of the biological system or
  2. Visualization

for addressing a biological question. Workflows can be a combination of components from the same or different software packages using several scripts and manual steps.

Nuclei Tracking (ImageJ)

Workflow
has function
Object tracking
need a thumbnail

Neuron Tracing 3D (ImageJ)

Workflow
has function
Filament tracing
Neuron image analysis
Feature enhancement
need a thumbnail

Nuclei Segmentation (Python)

Workflow
Description

This workflow processes images of cells with discernible nuclei and outputs a binary mask containing where nuclei are detected.

has function
Adaptative thresholding
Watershed segmentation
Object detection
Smoothing
need a thumbnail

Spot Detection (Icy)

Workflow
Description

This workflow uses ICY wavelet based spot detector to detect spots in 2D images.

has function
Spot detection
need a thumbnail

Spot Detection 3D (ImageJ)

Workflow
Description

This workflow detects spots from a 3D image by using straightforward set of ImageJ components. It receives the Laplacian Radius and the Threshold  value s input.

has function
Spot detection
need a thumbnail
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