Workflow

A workflow is a set of components assembled in some specific order to

  1. Measure and estimate some numerical parameters of the biological system or
  2. Visualization

for addressing a biological question. Workflows can be a combination of components from the same or different software packages using several scripts and manual steps.

Nuclei Segmentation (Mask-RCNN)

Workflow
Description

NEUBIAS-WG5 workflow for nuclei segmentation using Mask-RCNN. The workflow uses Matterport Mask-RCNN. Keras implementation. The model was trained with Kaggle 2018 Data Science Bowl images.

has topic
Machine learning
has function
Image segmentation
Object detection
need a thumbnail

Landmark detection DMBL model prediction

Workflow
Description

This workflow predict landmark positions on images by using DMBL landmark detection models.

has topic
Machine learning
has function
Landmark assignment
need a thumbnail

Landmark detection DMBL model training

Workflow
Description

This workflow trains DMBL landmark detection models from a dataset of annotated images.

has topic
Computerized tomography
has function
Landmark assignment
need a thumbnail

Landmark detection LC models prediction

Workflow
Description

This workflow predict landmark positions on images by using LC landmark detection models.

has topic
Machine learning
has function
Landmark assignment
need a thumbnail

Landmark detection LC models training

Workflow
Description

This workflow trains LC landmark detection models from a dataset of annotated images.

has topic
Machine learning
has function
Landmark assignment
need a thumbnail
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