A simple MSER based segmentation tool for spot detection in 2/3/4D.

Type
Component
Author
Varun Kapoor
Implementation Type
plugin
Programming Language
Java
Supported image dimension
2D
3D
time-series
Interaction Level
Automated
License/Openness
Free and open source
Description

MSER based on implementation in imglib2 provided as an interactive GUI tool for spot detection in 2/3/4D images.

Workflow steps
Step number: Spot Detection in 2/3/4D
ImgLib2
Image segmentation
Download Page
Source: https://github.com/kapoorlab/Fiji-MSER, https://github.com/kapoorlab/Ma…
Documentation Link
Explanation of how to tune MSER parameters
Usage Example Link
https://twitter.com/EntraCod/status/1353070156868587520