Nuclei Segmentation 3D (Ilastik)

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Type
Workflow
Author
Paavolainen, Lassi
Requires
ilastik
Execution Platform
Linux
Mac
Windows
Programming Language
Python
Supported image dimension
3D
Interaction Level
Automated
License/Openness
Free and open source
Description

Execute Nuclei Segmentation in 3D images using pixel classification with ilastik.

has function
Pixel classification
has topic
Machine learning
Entry Curator
lascholz
Download Page
Neubias BIAFLOWS workflow of Nuclei Segmentation 3D with ilastik
Reference Publication Link
ilastik: interactive machine learning for (bio)image analysis