Image segmentation

Image segmentation is (one of) the (few) concept(s) on the border between Image (pre)processing (Image->Image) and Image analysis (Image->Data).

IdentifyPrimaryObjects

Component
Description

Identify objects (as nuclei) within an image without needing the assistance of another cellular feature (as cell). 

has topic
Fluorescence microscopy
has function
Image segmentation
Cell segmentation
Object detection
CellProfiler

MembraneQuant

Collection
Description

MembraneQuant performs automatic evaluation on IHC membrane stainings (HER2, EGFR etc).

Using color deconvolution, MembraneQuant detects cell membrane and measures staining intensity on the chromogen channel. This way it is possible to calibrate the software to the actual stain protocol in the pathology lab. The algorithm categorizes the detected membrane to weak positive, medium positive and strong positive classes.

This software has an IVD certification for HER2 quantification.

has topic
Digital histology
has function
Image segmentation
MembraneQuant

Maximum Finder (KNIME)

Component
has topic
Bioimage informatics
has function
Image feature detection
Image segmentation
need a thumbnail

Voronoi Segmentation (KNIME)

Component
has topic
Digital histology
has function
Image segmentation
Object detection
need a thumbnail

Segment Cropper (KNIME)

Component
has topic
Bioimage informatics
has function
Image classification
Image segmentation
need a thumbnail
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