Image registration

Image registration is the process of transforming different sets of data into one coordinate system. Registration is necessary in order to be able to compare or integrate the data obtained from different sensors/imaging modalities, at different times, from different view points, etc. . Registration can be based on correspondence established between the landmarks or feature points. Alternatively, some similarity/distance metric is established between the image intensity maps to navigate the registration process.

Synonyms
Image alignment

Fiji CMTK GUI

Component
Description

Working version of a simple GUI frontend for CMTK image registration tools in Fiji

has topic
Imaging
Multimodal imaging
has function
Image registration
Affine registration
Deformable registration
need a thumbnail

MIPAV

Collection
Description

The MIPAV (Medical Image Processing, Analysis, and Visualization) application enables quantitative analysis and visualization of medical images of numerous modalities such as PET, MRI, CT, or microscopy. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites (via the internet) can easily share research data and analyses, thereby enhancing their ability to research, diagnose, monitor, and treat medical disorders.

has topic
Bioimage informatics
Imaging
Magnetic resonance imaging
Computerized tomography
has function
Image registration
Image analysis
Object-based colocalisation
Image segmentation
Image thresholding
Pixel classification
Smoothing
Image visualisation
Image feature detection
Colocalisation analysis

ANTs: Advanced Normalization Tools

Collection
Description

ANTs computes high-dimensional mappings to capture the statistics of brain structure and function.

Image Registration

Diffeomorphisms: SyN, Independent Evaluation: Klein, Murphy, Template Construction (2004)(2010), Similarity Metrics, Multivariate registration, Multiple modality analysis and statistical bias

Image Segmentation

Atropos Multivar-EM Segmentation (link), Multi-atlas methods (link) and JLF, Bias Correction (link), DiReCT cortical thickness (link), DiReCT in chimpanzees

 

has topic
Bioimage informatics
has function
Image registration
Affine registration
Rigid registration
Deformable registration
Image segmentation
Pixel classification
Illumination correction
Advanced Normalization Tools

CMTK

Component
Description

A software toolkit for computational morphometry of biomedical images, CMTK comprises a set of command line tools and a back-end general-purpose library for processing and I/O.

The command line tools primarily provide the following functionality: registration (affine and nonrigid; single and multi-channel; pairwise and groupwise), image correction (MR bias field estimation; interleaved image artifact correction; EPI unwarping), processing (filters; combination of segmentations via voting and STAPLE; shape-based averaging), statistics (t-tests; general linear model).

has topic
Bioimage informatics
Magnetic resonance imaging
Multimodal imaging
Statistics
has function
Image registration
Affine registration
Deformable registration
Image analysis
Image classification
Image processing
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TeraStitcher

Component
Description

TeraStitcher is a free tool that enables the stitching of Teravoxel-sized tiled microscopy images even on workstations with relatively limited resources of memory (<8 GB) and processing power. It exploits the knowledge of approximate tile positions and uses ad-hoc strategies and algorithms designed for such very large datasets. The produced images can be saved into a multiresolution representation to be efficiently visualized (e.g. Vaa3D-TeraFly) and processed.

has function
Alignment construction
Image registration
Rigid registration
Image stitching
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