3D-Segmentation

need a thumbnail
Type
Workflow
Author
André Dias, Marco Werner, Kevin R. Ward, Jean-Baptiste Fleuryd and Vladimir A. Baulin
License/Openness
Free and open source
Description

Image removed.

Workflow steps
Step 1: 2D mask for segmentation of stack
Auto Local Threshold
Image segmentation
3D Segmentation: getting statistics about voxels
Cell segmentation and measurements
Volume rendering
Step 3: 3D Alignment to correct 3D shift
Correct 3D drift
Alignment construction
Reference Publication Link
http://biii.eu/node/1565