Automated

python-javabridge

Collection
Description
The javabridge Python package makes it easy to start a Java virtual machine (JVM) from Python and interact with it. Python code can interact with the JVM using a low-level API or a more convenient high-level API. PyPI record: https://pypi.python.org/pypi/javabridge Documentation: http://pythonhosted.org/javabridge/ GitHub repository: https://github.com/CellProfiler/python-javabridge Report bugs here: https://github.com/CellProfiler/python-javabridge/issues python-javabridge is licensed under the BSD license. See the accompanying file LICENSE for details.
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ijblob

Component
Description

## Features >The IJBlob library indentifying connected components in binary images. The algorithm used for connected component labeling is: >Chang, F. (2004). A linear-time component-labeling algorithm using contour tracing technique. Computer Vision and Image Understanding, 93(2), 206–220. doi:10.1016/j.cviu.2003.09.002 ##Reference Wagner, T and Lipinski, H 2013. IJBlob: An ImageJ Library for Connected Component Analysis and Shape Analysis. Journal of Open Research Software 1(1):e6, DOI:

has topic
Bioimage informatics
has function
Object detection
Object feature extraction
Shape features
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Histo_surfaces

Workflow
Description

An ImageJ macro for calculating empty surfaces on histological slices (ex: tubules in a kidney).

has topic
Digital histology

v3dlib

Collection
Description
v3dlib library is a cross-platform C++ library written in wxWidgets for displaying 3D images. The most important part of the library is a window that can display 3D images of various types (RGB, RGB16, GRAY8, GRAY16, and float). The window can easily be extended of a new functionality and is used in many applications (e.g., viewer3d, Acquiarium, batchcrop, and others).
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softWoRx 5.0

Collection
Description
softWoRx® 5.0 is the latest in DeltaVision image acquisition software. Find samples, acquire images and process data quickly and efficiently with the intuitive user interface. softWoRx 5.0 includes visualization and measurement tools and exports data in a wide variety of formats making it a versatile tool for more than just image acquisition.
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