Collection

A collection is a software that encapsulate a set of bioimage components and/or workflows.

Description

Metamorph provides all tools needed to perform analysis of acquired images with user-friendly application modules for biology-specific analysis such as cell signaling, cell counting, and protein expression.

Matamorph user interface
Description

The Huygens Software Suite consists of different image processing packages with functionalities that include deconvolution, interactive analysis, and volume visualization of 2D-3D multi-channel and time series images from fluorescence microscopes such as widefield, confocal, multi-photon, spinning disk, Array Detector, STED, and Light Sheet

Description
"GNU Octave is a high-level language, primarily intended for numerical computations."* It can also be used for image processing, statistics and plotting as well as Matlab. "GNU Octave is also freely redistributable software. You may redistribute it and/or mod- ify it under the terms of the GNU General Public License as published by the Free Software Foundation."* *
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Description

**Collaborative Annotation Toolkit for Massive Amounts of Image Data** CATMAID is a Collaborative Annotation Toolkit for Massive Amounts of Image Data. It is designed to navigate, share and collaboratively annotate massive image data sets of biological specimens. The interface is inspired by GoogleMaps, with which it shares basic navigation concepts, enhanced to allow the exploration of 3D biological image data acquired by optical or physical sectioning microscopy techniques. The interface enables seamless sharing of regions of interest through bookmarks and synchronized navigation through multiple registered data sets. With massive biological image data sets it is unrealistic to create a sustainable centralized repository. A unique feature of CATMAID is its partially decentralized architecture where the presented image data can reside on any Internet accessible server and yet can be easily cross-referenced in the central database. In this way no image data are duplicated and the data producers retain full control over their images. CATMAID is intended to serve as data sharing platform for biologists using high-resolution imaging techniques to probe large specimens. Any high-throughput, high-content imaging project such as gene expression pattern screens would benefit from the interface for data sharing and annotation.

CATMAID
Description
Wherever three-dimensional data sets need to be processed, in materials science, geosciences, environmental or engineering applications, Avizo offers abundant state-of-the-art features within an intuitive workflow and easy-to-use graphical user interface. Avizo is packaged in different Editions, with optional eXtension modules. Each Avizo Edition delivers tailored user interface and specific feature-set for each application area: [Avizo Standard](http://www.vsg3d.com/avizo/standard) [Avizo Earth](http://www.vsg3d.com/avizo/earth) [Avizo Wind](http://www.vsg3d.com/avizo/wind) [Avizo Green](http://www.vsg3d.com/avizo/green) [Avizo Fire](http://www.vsg3d.com/avizo/fire)
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