TANGO Tools for Analysis of Nuclear Genome Organization

Type
Author
Jean Ollion, Julien Cochennec, Christophe Escudé, François Loll, Thomas Boudier
Execution Platform
Supported image dimension
Interaction Level
License/Openness
Description

## About TANGO software is an open-source software for Analysis of Nuclear Genome Organization. It is composed of an ImageJ plugin for batch processing and analysis, and a R package for statistical analysis. Reference: 2528 ## Some key features - Image import uses bioimage formats. - Construction of workflow in GUI by choosing filters / segmentation strategy for - Prefiltering - Segmentation - Postfiltering - Isolated nuclei could individually be inspected, deleted from list and subjected for detailed analysis. - Uses MCIB3D library as backend. - Basic usage is to segment nucleus, crop them to single nucleus objects, segment substructures within objects and measure their properties. - Optionally R can be connected to do detailed analysis of results. - Uses MongoDB to manage huge data set.

has biological terms
Entry Curator
Last modified
04/26/2023 - 15:23