Tissue analysis from histological sections

S├ębastien Tosi
Execution Platform
Programming Language
Supported image dimension
Interaction Level

This macro batch processes all the 2D images (tif and jpg files) located in a user defined folder by calling Fiji Weka trainable segmentation to classify each pixel, and reports the areas of each class in a human readable results table. The classifier to be applied to each image should be previously trained on a representative image by an expert and exported to file (Save classifier) into the image folder to be processed.

has function
has biological terms
Additional keywords
Entry Curator