cell organelles

Colocalization Colormap

Component
Description

Colocalization Colormap –an ImageJ Plugin for the Quantification and Visualization of Colocalized Signals

This ImageJ plugin implements the Jaskolski's algorithm (Jaskolski et al. 2005). It creates a pseudo-color map of correlations between pairs of corresponding pixels in two original input images. With it one can quantitativly visualize colocalization.

has topic
Bioimage informatics
Data sharing
Fluorescence microscopy
has function
Analysis
Colocalisation analysis
Icon of the Colocalization Colormap Olugin

Nanotomy: Large-scale electron microscopy (EM) datasets

Submitted by Perrine on

Nanotomy shares based on the ATLASTM browser-based viewer from Zeiss. This database allow to browse data set from the publications of Giepmans lab. 

The full list of data set is availble from :

nanotomy.org

Except the papers and where otherwise noted, this work is licensed under a Creative Commons Attribution 4.0 International License

 

Images can be downloaded but only as screenshots (saved as png).

Interaction Analysis

Component
Description

This plugin can be used for inferring spatial interactions between patterns of spot-like objects in images or between coordinates read from a file. 

has topic
Fluorescence microscopy
has function
Image segmentation
Object detection

Volume Viewer

Component
Description

3D reslicing and threshold-enabled 3D visualization.

has topic
Imaging
has function
Visualisation
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