This lesson shows how to use Python and skimage to do basic image processing.
This is a resource for image analysis training material, with a focus on research in the life sciences.
Currently, this resource is mainly meant to serve image analysis trainers, helping them to design courses. However, we might add more text (or videos) to the material such that it could also be used by students for self-directed study.
MATLAB, for advanced analysts. Slides, Scripts, Reproduction of results & deconstruction. Uniquely designed analtical approaches towards understanding cell cluster movements, based on stress / cell migration analysis.
ImageJ & R, for advanced analysts. Slides, Scripts, Reproduction of results & deconstruction. Segmentation of filopodia (thin filamentous structure) and analysis of their shape and movements to characterize phenotypes.
MATLAB, CellProfiler, Advanced Cell Classifier, for advanced analysts. Slides, Scripts, Reproduction of results & deconstruction. We aim to implement an image-based analysis of a biological system by profiling the phenotipic response of a cancer cell line following perturbation with a small-molecule compound library