Free and open source

MonogenicJ performs multiresolution monogenic analyses of 2D images. It extracts wavelet-domain features that characterize the local orientation, the phase and the dominant frequency of an image patch at various levels of resolution.

Wavelet-based method to merge a stack of micrographs taken at different focal positions (aligned along the optical axis) into a single, entirely focused composite image.

This plugin allows the creation of custom animations for 3D viewing. It will generate a new sequence that can be edited in Icy, and saved.

The animation is based on key framing, as in most of 3D rendering software projects.

This plugin has two components:

• Elastic Montage
  • montaging mosaics from overlapping tiles where the tiles have non-linear relative deformation
• Elastic Stack Alignment
  • alignment of deformed section series from serially sectioned volumes