A workflow is a set of components assembled in some specific order to
for addressing a biological question. Workflows can be a combination of components from the same or different software packages using several scripts and manual steps.
Thie lecture is for Python beginners who want to dive into image processing with Python. It specifically aims for students and scientists working with microscopy images in the life sciences. We start with python basics, dive into descriptive statistics for working with measurements and matplotlib for plotting results.
These slides give an introduction to user interfacre customization in ImageJ using ImageJ Macro and to ImageJ Macro Markdown.
Big thanks to Jerome Mutterer (IBMP) and Nicolas De Francesco (IMBICE) who shared material openly I reused when making these slides.
Supplementary material is available as well under this doi: 10.5281/zenodo.4561714
Talk about sharing and licensing materials such as [raw] data, manuscripts, code, slides, ... at the EMBO Course on Advanced Methods for Bio-image Analysis 2021 virtually in Heidelberg
These slides were shown in the "On-the-fly image processing session with Python and napari" session by Robert Haase of the Smart Microscopy Workshop at the Center for Cellular imaging at the University of Gothenbourg in May 2021.
