Windows

A more modern approach for denoising / smoothening before segmentation, works like Gaussian blurring but preserves edges and boundaries. Listed in Fiji update sites. ## Algorithm Algorithm description is in [this page](http://www.ipol.im/pub/art/2011/bcm_nlm/) 2612. ## Example usage Localization of Membrane bound protein in Arabidopsis meristem was analyzed using the non-local-mean filter for refining its position 2613. ## impression It's effect is somewhere between Gaussian blurring and anistropic diffusion.

## About TANGO software is an open-source software for Analysis of Nuclear Genome Organization. It is composed of an ImageJ plugin for batch processing and analysis, and a R package for statistical analysis. Reference: 2528 ## Some key features - Image import uses bioimage formats. - Construction of workflow in GUI by choosing filters / segmentation strategy for - Prefiltering - Segmentation - Postfiltering - Isolated nuclei could individually be inspected, deleted from list and subjected for detailed analysis. - Uses MCIB3D library as backend. - Basic usage is to segment nucleus, crop them to single nucleus objects, segment substructures within objects and measure their properties. - Optionally R can be connected to do detailed analysis of results. - Uses MongoDB to manage huge data set.

# Summary VolViewer is used for viewing volume images from, for example, confocal microscopy or optical projection tomography # Features * Real-time volume rendering using an optimized 3D texture slicing algorithm. * Interactive transfer functions to independently adjust opacity and intensity for up to three data channels. * Real-time per channel thresholding, brightness and contrast operators. * On-the-fly gradient computation for local illumination. * Iso-surface computation with surface smoothing. * Section viewing in any orientation / position. * Real-time volume clipping. * 3D measurements, filters & segmentation. * Key frame interpolation for movie export. * Stereo rendering using either quad buffer or anaglyph mode. * Scripting interface to other systems, e.g. Matlab, OMERO, etc. # Project Status * Not supported anymore # Source code * [Source code](https://github.com/ut666/VolViewer "GitHub repository")

Pandore is a standardized library of image processing operators. The current version contains image processing operators that operate on grayscale, color and multispectral, 1D, 2D and 3D images.

Link: Operator Index

ISE-MeshTools is a software designed by Renaud Lebrun, from the university of Montpellier II. ISE-MeshTools is a system for the processing and editing of series of 3D triangular meshes. The system provides a set of tools for editing, positioning, deforming, labelling, measuring and rendering sets of 3D meshes. Features include: • Retrodeformation for un-deforming fossils/deformed specimens • Point and curve primitives for placing the exact type of landmark points you’re interested in • Easy to use 3D interface for positioning and manipulating sets of surfaces and landmark primitives • Mesh tagging, labelling and colouring (to allow for the creation of anatomy atlases) • Mesh scalar computation and colouring (based upon curvature/thickness etc...) Lebrun, R., ISE-MeshTools, a 3D interactive fossil reconstruction freeware., 12th Annual Meeting of EAVP, Torino, Italy ; 06/2014