Windows

Simple macro to separates blobs.

• Load the ImageJ sample image "Blobs"
• Run the plugin Morphological Segmentation
• Display the overlaid

This macro depends on "Morphological Segmentation" component of the MorphoLibJ library, which should be installed via update sites.

An ActionBar is a simple annotated text document that has snippets of Imagej macros or Beanshell arranged into buttons. This tool is very useful when creating custom work flows integrating multiple components. Each component can be linked to a button for a more streamlined and accessible workflow.

It explains how to use ImageJ to compare the density (aka intensity) of bands on an agar gel or western blot.

Some notes can be found here: http://cellnetmcweb.bioquant.uni-heidelberg.de/image-analysis/ShortTutorials/Fiji_GelAnalyzer.pdf

An exponential curve fitting library used for Fluorescence Lifetime Imaging (FLIM) and Spectral Lifetime Imaging (SLIM), available as:

• Source code as C/C++ and Java library

• ImageJ plugin

• Standalone Open-Source Windows application

Publications:

• Barber, P.R., Proc. SPIE, 5700, 2005.pdf
• Barber, P.R., J. R. Soc. Interface, 6, 2009.pdf