slideToolkit

Type
Author
Bastiaan G. L. Nelissen
Joost A. van Herwaarden
Frans L. Moll
Paul J. van Diest
Gerard Pasterkamp
Execution Platform
Programming Language
Supported image dimension
Interaction Level
License/Openness
License
MIT
Description

SlideToolkit is a collection of command-line tools to assist with the automated histology analysis of whole-slide images. The publication linked in the "reference" details the actual workflow. 

This includes tools to organize the data, perform tiling and subsequent batch processing of the generated tiles in a cell profiler pipeline. All the tools are designed to run on a single PC or on a HPC system. The scripts in the toolkit are on github under MIT licence.

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Additional keywords
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