CIDRE

Illumination correction method
Type
Collection
Author
Kevin Smith
Requires
ImageJ
MATLAB
Execution Platform
Linux
Mac
Windows
is compatible with
ImageJ
MATLAB
Supported image dimension
2D
time-series
Interaction Level
Automated
License/Openness
Free and open source
License
GNU GPL2
Description

CIDRE is a retrospective illumination correction method for optical microscopy. It is designed to correct collections of images by building a model of the illumination distortion directly from the image data. Larger image collections provide more robust corrections. Details of the method are described in

K. Smith, Y. Li, F. Ficcinini, G. Csucs, A. Bevilacqua, and P. Horvath
CIDRE: An Illumination Correction Method for Optical Microscopy, Nature Methods 12(5), 2015, doi:10.1038/NMETH.3323

has function
Illumination correction
has topic
High content screening
Light microscopy
Entry Curator
czhang
Post date
09/12/2017 - 09:53
Last modified
04/29/2023 - 14:27
Download Page
https://github.com/smithk/cidre/
Reference Publication Link
http://dx.doi.org/10.1038/nmeth.3323
DOI link
10.1038/nmeth.3323
has comparison
http://www.nature.com/nmeth/journal/v12/n5/full/nmeth.3323.html