YeastSpotter

Type
Author
Alex Lu
Alan Moses
Requires
Execution Platform
Implementation Type
Programming Language
Supported image dimension
Interaction Level
License/Openness
License
MIT
Description

Code to segment yeast cells using a pre-trained mask-rcnn model. We've tested this with yeast cells imaged in fluorescent images and brightfield images, and gotten good results with both modalities. This code implements an user-friendly script that hides all of the messy implementation details and parameters. Simply put all of your images to be segmented into the same directory, and then plug and go.

has function
has biological terms
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