Neuron studio is a software package to reconstruct neurons from 3D confocal images. Reconstruction can be done manually, semi-manually or fully automatic. The images as well as the detected objects are rendered in 3D. A spine detection and classification function is also included. Results can be exported as a text file with coords of the spines. It seems that active development has stopped in 2009. NeuronStudio is being developed at the Computational Neurobiology and Imaging Center (CNIC), a research laboratory at the Neuroscience Department of the Mount Sinai School of Medicine in New York.

NeuronStudio can be used with default parameters or user-defined parameters (Fully or semi-automated).

Execution Platform
Illustrative Image
Supported image dimension
Additional keywords
has interaction level
has author
Susan L. Wearne Principal Investigator
Patrick R. Hof Co-Investigator
Alfredo Rodriguez Sr. Software Engineer
Doug Ehlenberger Software Engineer
has entry curator
has license
This software is provided "as is" and without warranties or representations, either express or implied, as to performance, merchantability, or fitness for any particular purpose and the user assumes all risks when using it. You may not decompile, disassem