MSRC Registration Toolbox

This python toolbox performs registration between 2-D microscopy images from the same tissue section or serial sections in several ways to achieve imaging mass spectrometry (IMS) experimental goals.

This code supports the following works and enables others to perform the workflows outlined in the following works, please cite them if you use this toolbox:

Advanced Registration and Analysis of MALDI Imaging Mass Spectrometry Measurements through Autofluorescence Microscopy, 10.1021/acs.analchem.8b02884
Next Generation Histology-directed Imaging Mass Spectrometry Driven by Autofluorescence Microscopy, 10.1021/acs.analchem.8b02885

has function

Image registration

Feature-based registration

has topic

Fluorescence microscopy

Multimodal imaging

has biological terms

mouse

Additional keywords

Imaging mass spectrometry

Entry Curator

joakim.lindblad

Post date

03/20/2019 - 13:16

Last modified

05/19/2021 - 20:53

Workflow steps

Step number: purpose

Image processing

Download Page

https://github.com/NHPatterson/regToolboxMSRC

Reference Publication Link

Advanced Registration and Analysis of MALDI Imaging Mass Spectrometry Measureme…

Next Generation Histology-directed Imaging Mass Spectrometry Driven by Autofluo…

attribution instructions

This code supports the following works and enables others to perform the workflows outlined in the following works, please cite them if you use this toolbox: Advanced Registration and Analysis of MALDI Imaging Mass Spectrometry Measurements through Autofluorescence Microscopy, 10.1021/acs.analchem.8b02884 Next Generation Histology-directed Imaging Mass Spectrometry Driven by Autofluorescence Microscopy, 10.1021/acs.analchem.8b02885