Type
Author
Dimitrios Vavylonis
Xiaolei Huang
Matt Smith
Requires
Execution Platform
Programming Language
is compatible with
Supported image dimension
Interaction Level
License/Openness
Description

JFilament is an ImageJ plugin for segmentation and tracking of 2D and 3D filaments in fluorescenece microscopy images. The main algorithm used in Jfilament is "Stretching Open Active Contours" (SOAC). In order to use this method, the user must define seed points in the image where the SOAC method will begin.

JFilament also includes 2D "closed" active contours which can be used for tasks such as segmentation and tracking of cell boundaries.