Automated

Description

- 2D Stabilization in each slice of the stacks in time. - 3D Stabilization intravital imaging of all the stacks (including the dimension Z) - create the videos and the stabilized images in a new folder 2701

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Description

PSF Lab is a software program that calculates the illumination point spread function of a confocal microscope under various imaging conditions. It is available in 32-bit and 64-bit for Windows and in 64-bit for Mac.

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Description

FOCAL (Fast Optimized Cluster Algorithm for Localizations) is a rapid density based algorithm for detecting clusters in localization microscopy datasets.

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Description
The Microscopy Image Analysis Tool (MIATool) is a software application designed for the viewing and processing of N-dimensional array of images. At its core is an image viewer which allows the traversal of an N-dimensional array of images. Besides the standard display as pixels of varying intensity values, options are available to view the images as mesh or contour plots. The current version of MIATool supports four different image editing tools which can be used to process the images displayed in the viewer. The intensity adjustment tool provides different ways to modify the pixel intensity values, and the crop tool allows trimming of the images to retain only the portion that is of interest. The two remaining tools - the segmentation tool and the label tool - can be used for manual image segmentation and image labeling.
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Description

WaveTracer is a plugin for Metamorph. It represents a functional method for real-time reconstruction with automatic feedback control, without compromising the localization accuracy. It relies on a wavelet segmentation algorithm, together with a mix of CPU/GPU implementation.

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