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This plugin facilitates the assembly of a mosaic of overlapping individual images, or tiles. It provides a semi-automated solution where the initial rough positioning of the tiles must be performed by the user, and where the final delicate adjustments are performed by the plugin.

The MosaicJ plugin requires that a second plugin, named TurboReg, is installed. 

This plugin provides a painter to visualize 2D flows. 2D Flows are couples of two sequences, one for the horizontal displacements, the other for the vertical displacements. This plugin provides a painter that draws flow arrows on top of another sequence.

This module performs a series of morphological operations on a binary image or grayscale image, resulting in an image of the same type. 

The purpose of this plugin is to register—in other words, to align or to match—two images, one of them being called the source image and the other the target image.

When opening the Pannoramic Viewer you see all of your virtual slides in thumbnail view. Selecting one (or up to 10 at a time) the slide gets under the virtual objective of the virtual microscope. Here you can move and change the magnification of the slide quickly and easily using the mouse. Emphasizing 'quickly' is important considering the fact that the size of an average virtual slide can easily be more than 1 GB.

Label images according to their position in plates. 

ImageMath performs simple mathematical operations on image intensities, like addition, subtraction, multiplication, division...

MembraneQuant performs automatic evaluation on IHC membrane stainings (HER2, EGFR etc).

Using color deconvolution, MembraneQuant detects cell membrane and measures staining intensity on the chromogen channel. This way it is possible to calibrate the software to the actual stain protocol in the pathology lab. The algorithm categorizes the detected membrane to weak positive, medium positive and strong positive classes.

This software has an IVD certification for HER2 quantification.

This is a set of Matlab routines for computing generalized Daubechies wavelet filters.

Layer for 3D View that displays a Bounding Box around the object.