Type
Author
Zhou, Zhi
Liu,, Xiaoxiao
Long, Brian
Peng, Hanchuan (http://orcid.org/0000-0002-3478-3942)
Requires
Execution Platform
Implementation Type
Programming Language
Supported image dimension
Interaction Level
License/Openness
License
MIT License
Description

"we present a new fully automated 3D reconstruction algorithm, called TReMAP, short for Tracing, Reverse Mapping and Assembling of 2D Projections. Instead of tracing a 3D image directly in the 3D space as seen in majority of the tracing methods, we first trace the 2D projection trees in 2Dplanes, followed by reverse-mapping the resulting 2D tracing results back into the 3D space as 3D curves; then we use a minimal spanning tree (MST) method to assemble all the 3D curves to generate the final 3D reconstruction. Because we simplify a 3D reconstruction problem into 2D, the computational costs are reduced dramatically." 

Suitable for high throughput neuron image analysis (image sizes >10GB). This plugin can be used with default parameters or user-defined parameters.

has biological terms
Entry Curator