Classification

Re-occurs among biii.info tags (visualisation, rendering, viewer, classification, ...)|ToDo: Clear up relation between Classification, Clustering, and Prediction and recognition (also in main EDAM)

OpenCV / flann. Clustering and Search in Multi-Dimensional Spaces

Collection
has topic
Machine learning
has function
Classification
Clustering
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Spine classification based on kernel density estimation

Component
Description

We propose to use a kernel density estimation (KDE) based approach for classification. This non-parametric approach intrinsically provides the likelihood of membership for each class in a principled manner. The implementation was used in Ghani2016. Any papers using this code should cite Ghani2016 accordingly. The software has been tested under Matlab R2013b.

 

Sample Data: Annotated two-photon images of dendritic spines

has function
Neuron image analysis
Classification

VIGRA

Collection
Description
has topic
Bioimage informatics
Machine learning
has function
Texture extraction
Classification
Geometrical transformation
Image convolution
Morphological operation

FlagImage

Component
Description

CellProfiler FlagImage module allows to assign a flag if an image meets certain measurement criteria that you specify (for example, if the image fails a quality control measurement). The value of the flag is 1 if the image meets the selected criteria (for example, if it fails QC), and 0 if it does not meet the criteria (if it passes QC).

has topic
Bioimage informatics
High content screening
Statistics
has function
Classification
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