From workflows to simple batch macros: Quantify intensity at the nuclear envelope.
ImageJ, for those with GUI knowledge but without scripting knowledge.
Workflow
From workflows to simple batch macros: Measure Phalloidin in the nucleus area.
ImageJ, for those with GUI knowledge but without scripting knowledge
Tumor Blood Vessels: 3D Tubular Network Analysis
In this session, we will implement a simple ImageJ macro to segment and analyze the blood vessel network of a subcutaneous tumor. The analysis is fully performed in 3D, and possible strategies to extract statistics of the network geometry and interactively visualize the results are also discussed and implemented.
Hands-on exercises for learning Imaris
Imaris, Visualization, spots segmentation, surfaces segmentation, colocalization, spots tracking, Batch, plotting graphs with Vantage.
Introduction to ImarisXT using MATLAB
Imaris scripting using Matlab (ImarisXT API trining). Slides, protocols, some scripts. Hands-on