Systems Science of Biological Dynamics database (SSBD:database)
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This database provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, gene expression nuclei, etc. Quantitative biological data and microscopy image are collected from a variety of species, sources and methods. These include data obtained from both experiment and computational simulation. It is a japenese initiative.
has Ground truth
It also stores all the qualitative data (i.e. segmented data or ROIs) separately as numerical datasets.
has location
has imaging details
Diverse microscopes (mostly light microscopy, but some electronic microscopy as well). SSBD tries to store and curate 4D datasets, ie images that are 3D together with time element.