Diadem challenge

Diadem challenge

Comprises six data set collections from different animal species, brain regions, neuron types, and visualization methods.

  1. Cerebellar climbing fiber
  2. Olfactory projection fiber
  3. Neocortical Layer 1 Axon
  4. Neuromuscular Projection Fiber
  5. Hippocampal CA3 Interneuron
  6. Visual Cortical Layer 6

Brown, K. M., Barrionuevo, G., Canty, A. J., De Paola, V., Hirsch, J. A., Jefferis, G. S. X. E., Lu, J., Snippe, M., Sugihara, I., & Ascoli, G. A. (2011). The DIADEM data sets: representative light microscopy images of neuronal morphology to advance automation of digital reconstructions. Neuroinformatics, 9(2-3), 143-157.

Image
has Ground truth

Manually traced digital neural reconstructions,

has imaging details

Imaging varies by neuron type and species, includes:

  1. Transmitted light brightfield
  2. Confocal
  3. in-vivo 2-photon laser scanning
has biological terms