Contents

A canvas plugin using JFreeChart to show intensity profile of a specific row or column. Initially used in a 1-row image of 1D signal representation. Can also used with Micro-Manager for Icy Plugin to show 1D signal from hardware like data acquisition device as waveform. Common 2D+ sequence is also supported. Using it by select the plugin icon in the canvas type combobox of the sequence window, a JFreeChart line chart will show up.

Enables Python scripts that are run inside Icy to communicate with other Python instances outside Icy. This allows the access to CPython-only libraries such as Numpy.

Resources requiring this include: CalloseCounter, BioFlow, EvaFE In Python

This tutorial explain how to create an intensity profile over an ROI.

display-shiny

Process an image using Perreault’s modern constant-time median filtering algorithm.

Identifies dead worms based on a couple of parameters. 

This tutorial details how to process an image area defined by ROI.

Merges images from different columns to one image object as follows: the input images are regarded as one single line of pixels (depending on the iteration order of each underlying image factory). 

DisplayDensityPlot plots measurements as a two-dimensional density plot.

H2 database packaged as an Icy plugin

See http://www.h2database.com

ExpandOrShrinkObjects expands or shrinks objects by a defined distance.