Contents

Image Title Category Type Description Updated
need a thumbnail Image Normalizer (KNIME) Software Component 03/03/2020 - 12:37
need a thumbnail MultiThresholder (ImageJ) Software Component 03/02/2020 - 17:42
need a thumbnail Math operations++ (Icy) Software Component

Short Description

Execute complex math operations on sequences, such as '3*sequence1 + log(sequence2)/sequence3', in a single step. All the operations are executed pointwise.

 04/29/2023 - 15:48
need a thumbnail Hello world tutorial Software Component 09/13/2017 - 12:08
need a thumbnail Fill Regions Software Component

Fill regions in images.

 10/16/2019 - 16:43
need a thumbnail ImageJ2 Plugin KNIME Software Component 03/03/2020 - 14:01
need a thumbnail Max Homogeneity (KNIME) Software Component 03/02/2020 - 15:39
need a thumbnail Max Filter (KNIME) Software Component 03/02/2020 - 16:27
need a thumbnail Icy Widefield Fluorescence Microscope PSF Software Component 10/18/2019 - 16:43
need a thumbnail Image Reader (KNIME) Software Component 03/03/2020 - 12:45
need a thumbnail Quantile Filter (KNIME) Software Component 03/02/2020 - 10:56
EBImage Distance Map Transform Software Component

Computes the distance map transform of a binary image. The distance map is a matrix which contains for each pixel the distance to its nearest background pixel.

 10/17/2019 - 15:29
need a thumbnail Mycosis Lung Quantifier Software Component 09/13/2017 - 12:08
Volocity Restoration Software Collection 11/14/2019 - 11:08
need a thumbnail Icy Workspace Editor Software Component 10/18/2019 - 16:13
need a thumbnail CLAHE Software Component 09/13/2017 - 12:08
ICY Active Cells Software Component

This plug-in implements fast active contours for image segmentation. Their representation in terms of spline curves allows for a natural and intuitive manipulation of the active contour through control points.

Based on Delgado-Gonzalo et al. "Snakes on a Plane: A Perfect Snap for Bioimage Analysis"

 10/16/2019 - 19:37
need a thumbnail 3D Objects Counter Software Component
  • Counts the number of 3D objects in a stack.
  • quantifies for each found object the following parameters:
    • 3D intensity related measurement (with possible redirection to an image with the actual intensity value to be measured, for example for two channels measurements)
    • Volume and shape factors measurements, surface etc...
  • generates results representations such as:
    • Objects' map;
    • Surface voxels' map;
    • Centroids' map;
    • Centres of masses' map.
 08/07/2018 - 15:43
Crop 5D Software Component

Select a portion of a sequence in all 5 dimensions.

 10/17/2019 - 16:34
need a thumbnail Transform Virtual Stack Slices Software Component 10/18/2019 - 16:02