Component

A Component is an implementation of certain image processing / analysis algorithms.

Each component alone does not solve a Bioimage Analysis problem.

These problems can be addressed by combining such components into workflows.

Local Thresholding (KNIME)

Component
Description
Thresholding method
The used thresholding Method: Mean, Median, Sauvola, MidGrey, Bernsen, Niblack. Mean, Niblack and Sauvola are implemented using the fast integral image approach.
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Spot Detection (KNIME)

Component
has topic
Bioimage informatics
has function
Spot detection
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Measure Image Intensity (deprecated)

Component
Description

This module has been deprecated; in Cell Profiler 3.0, it is a function in module "Measurement"

has function
Analysis
Colocalisation analysis
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Remove Objects (EBImage)

Component
has topic
Bioimage informatics
has function
Object classification
Editing
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FlagImage

Component
Description

CellProfiler FlagImage module allows to assign a flag if an image meets certain measurement criteria that you specify (for example, if the image fails a quality control measurement). The value of the flag is 1 if the image meets the selected criteria (for example, if it fails QC), and 0 if it does not meet the criteria (if it passes QC).

has topic
Bioimage informatics
High content screening
Statistics
has function
Classification
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