|cython||Software||09/09/2018 - 22:49|
|simpleITK||Software||09/09/2018 - 22:49|
|Rivulet 2||Software||Collection||09/09/2018 - 22:49|
|ZEN Blue||Software||08/22/2018 - 14:55|
|ZEN Intellesis Trainable Segmentation||Software||Component, Workflow||
Perform Advanced Image Segmentation and Processing across Microscopy Methods
|08/22/2018 - 14:55|
|idr-py||Software||08/20/2018 - 11:20|
R wrapper around the OMERO Java Gateway, to enable access to OMERO via R using rJava
|08/20/2018 - 10:58|
Bisque (Bio-Image Semantic Query User Environment) : Store, visualize, organize and analyze images in the cloud. It also allow to run workflows using a set of deployed tools, such as CellProfiler, RootTipMultin Nuclear Tracker, Microtubule tracker etc...
Bisque was developed for the exchange and exploration of biological images.
|08/17/2018 - 17:06|
OpenImadis stands for Open Image Discovery: A platform for Image Life Cycle Management. It was previously called CID iManage (for Curie Image Database).
No image data conversions, no duplication.
- Uploads data to a secure server in the original format
|08/17/2018 - 16:45|
ScientiFig is a free tool to help you create, format or reformat scientific figures. It comes either as a stand alonesoftware, either as a Fiji/IJ plugin.
|08/17/2018 - 15:09|
|Fit a model for the growth of yeast cells||Software||Workflow||
This notebook uses the rOMERO-gateway and EBImage to process an Image associated to the paper 'Timing of gene expression in a cell-fate decision system'.
|08/20/2018 - 11:24|
|Cell or particle counting and scoring the percentage of stained objects||Software||Workflow||
This one example workflow from the Cell Profiler(CP) Examples . CP is commonly used to count cells or other objects as well as percent-positives, by measuring the per-cell staining intensity. This pipeline shows how to do both of these tasks, and demonstrates how various modules may be used to accomplish the same result.
|08/16/2018 - 13:49|
|Cell or particle Counting and scoring stained objects using CellProfiler||Software||Workflow||
This is a Jupyter notebook demonstrating the run of a code from IDR data sets by loading a CellProfiler Pipeline
The example here is applied on real data set, but does not correspond to a biological question. It aims to demonstrate how to create a jupyter notebook to process online plates hosted in the IDR.
It reads the plate images from the IDR.
|08/20/2018 - 11:20|
|Quantification of outer ring diameters of centriole or PCM proteins of cycling HeLa cells in interphase||Software||Workflow||
This workflow can be ran with data from 3D-SIM showing the centrosomes in order to compare the distribution of diameters of rings (or toroids) of different proteins from the centrioles or the peri centriolar material. It aims to reproduce the results of the Nature Cell Biology Paper Subdiffraction imaging of centrosomes reveals higher-order organizational features of pericentriolar material from the same data set but with a different analysis method.
|08/20/2018 - 11:11|
|Scientific Community Image Forum||Forum||
The Image.sc forum focuses on software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storage, and management of digital scientific images. The primary objective is to foster independent learning for everyone in the community.
|08/06/2018 - 13:52|
Python/C++ port of the ImageJ extension TurboReg/StackReg written by Philippe Thevenaz/EPFL.
A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.
|08/07/2018 - 13:41|
|Detection of Molecules - DoM||Software||Collection||
A collection of components for super resolution image data:
|06/29/2018 - 12:27|
|https://aivia.wikispaces.com/Welcome+to+the+Aivia+Wiki||Training Material||06/28/2018 - 02:31|
|Aivia||Software||Collection, Workflow||06/28/2018 - 02:31|
|JDK||Software||06/06/2018 - 15:16|