Search Results

The following table gives you a limited number of fields, you will get further info by clicking on the name of the tool. They are sorted by relevance, which is a simple score counting the number of time your search term appears in the tool description. If the search term appears in title or in tags, it will count twice.
Content type: Software
Relevance Supported Image Dimension requires Content type Excerpt
KNIME Image Processing and Analysis 17 Knime ImageJ, ICY Annotation, Graph Cut, OMERO, Bio-Formats, KNIME Anisotropic Diffusion , Processing, Image Calculator (KNIME), Image Normalizer (KNIME), ImgLib2, ImgLib2, Max Filter (KNIME), Max Homogeneity (KNIME), Quantile Filter (KNIME), Sigma Filter, Sigma Filter, Sobel Filter (KNIME), KNIME Variance Filter Software … Requires ImageJ ICY Annotation Graph Cut OMERO Bio-Formats KNIME Anisotropic Diffusion Processing Image Calculator (KNIME) Image Normalizer (KNIME) ImgLib2 ImgLib2 Max Filter (KNIME) Max Homogeneity …
3D object based colocalization using KNIME 7 3D KNIME Image Processing and Analysis Software … Type Workflow Author Juergen Reymann Requires KNIME Image Processing and Analysis Execution Platform Linux Mac Windows Programming Language KNIME Workflow Supported image dimension 3D Interaction Level … I do not know Description These two similar KNIME workflow solutions take 3D data stacks to segment the …
KNIME align image 7 2D KNIME Software … Type Component Author University of Konstanz KNIME Requires KNIME Execution Platform Linux Mac Windows Supported image … approach on the smoothed image. This node is contained in KNIME Image Processing extension has function Image …
KNIME Auto Crop 7 Software … Type Component Author University of Konstanz KNIME Implementation Type plugin Interaction Level Automated … Options include Pixel values, Margin, and more... This KNIME node is included in the KNIME Image Processing Extension has function Image crop has …
2D spots counting using KNIME 7 2D KNIME Image Processing and Analysis Software … Type Workflow Author Juergen Reymann Requires KNIME Image Processing and Analysis Execution Platform Linux Mac Windows Programming Language KNIME Workflow Supported image dimension 2D Interaction Level … Free and open source Description These two KNIME workflow solutions are similar: first one detects …
KNIME Average Filter 7 KNIME Software … Type Component Author University of Konstanz KNIME Requires KNIME Execution Platform Linux Mac Windows Interaction Level … - 20:03 Download Page https://nodepit.com/iu/org.knime.knip.feature.feature.group Documentation Link …
KNIME Connected Component Analysis 6 Software … Type Component Author University of Konstanz KNIME Interaction Level Automated License/Openness I do not … Copied from wikipedia [1] [2] This node is contained in KNIME Image Processing Extension Entry Curator migration Post … Last modified 10/18/2019 - 13:46 Download Page http://tech.knime.org/community/image-processing … migration.tool … …
KNIME Anisotropic Diffusion 6 Software … Type Component Author University of Konstanz KNIME Interaction Level Automated License/Openness Free and … to be used for filtering. This node is contained in KNIME Image Processing extension has function Image denoising … Last modified 10/16/2019 - 18:53 Download Page http://tech.knime.org/community/image-processing Reference Publication …
Voronoi Segmentation (KNIME) 6 need a thumbnail 2D KNIME Image Processing and Analysis, KNIME Software … Type Component Requires KNIME Image Processing and Analysis KNIME Execution Platform Linux Mac Windows Supported image … Last modified 10/18/2019 - 15:03 Download Page http://tech.knime.org/community/image-processing Documentation Link …
Spot Detection (KNIME) 6 need a thumbnail 2D KNIME Image Processing and Analysis, KNIME Software … Type Component Requires KNIME Image Processing and Analysis KNIME Execution Platform Linux Mac Windows Implementation … Last modified 03/02/2020 - 11:32 Download Page http://tech.knime.org/community/image-processing Documentation Link …
2D tracking using KNIME and Fiji 6 2D, time-series KNIME Image Processing and Analysis, Fiji Software … Type Workflow Author Juergen Reymann Requires KNIME Image Processing and Analysis Fiji Execution Platform Linux Mac Windows Programming Language KNIME Workflow Supported image dimension 2D time-series … Free and open source Description This simple KNIME workflow solution tracks 2D objects/cells in time …
Max Filter (KNIME) 6 need a thumbnail 2D, 3D, time-series KNIME Image Processing and Analysis, KNIME Software … Type Component Requires KNIME Image Processing and Analysis KNIME Execution Platform Linux Mac Windows Implementation … Last modified 03/02/2020 - 16:27 Download Page http://tech.knime.org/community/image-processing Documentation Link …
Image-classification with deep learning in KNIME 5.995 Software … License/Openness Free and open source Description Set of KNIME workflows for the training of a deep learning model for … - 17:49 Last modified 11/20/2020 - 11:09 Download Page KNIME workflows on the KNIME Hub Documentation Link Documentation on GitHub YouTube …
Interactive features visualization in KNIME 5.95 KNIME-Workflow Software … License/Openness Free and open source Description KNIME workflow to visualize a dataset described by multiple … - 09:40 Download Page Download the workflow from the KNIME-Hub Documentation Link Youtube tutorial Reference … … Visualisation … High content screening … Statistics … KNIME workflow to visualize a dataset described by multiple …
Max Homogeneity (KNIME) 5 need a thumbnail 2D KNIME Software … Type Component Requires KNIME Execution Platform Linux Mac Windows Implementation … Last modified 03/02/2020 - 15:39 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.filter.maxhomogenity.MaxHomo… … …
High-Content Screening (KNIME) 5 need a thumbnail 2D, time-series KNIME Software … Type Workflow Requires KNIME Execution Platform Linux Mac Windows Implementation … Documentation Link https://nodepit.com/workflow/com.knime.hub%2FUsers%2Fknime%2FExamples%2F99_Comm… Usage Example … … High content screening … High-Content Screening (KNIME) …
Global Thresholder (KNIME) 5 need a thumbnail 2D KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Execution Platform Linux … Last modified 03/03/2020 - 14:52 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.proc.ThresholderNodeFactory3… … …
Segment Cropper (KNIME) 5 need a thumbnail 2D KNIME Software … Type Component Requires KNIME Execution Platform Linux Mac Implementation Type … Last modified 03/02/2020 - 12:27 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.seg.cropper.SegmentCropperNo… … …
KNIME Multilevel Thresholding 5 need a thumbnail 2D, 3D, multi-channel, time-series KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Execution Platform Linux … Link https://hub.knime.com/BioML-Konstanz/extensions/org.knime.knip.feature/latest/o… … migration.tool … 4046 … 4155 … … use for thresholding. Currently only OTSU is available. … KNIME Multilevel Thresholding …
Image Converter (KNIME) 5 need a thumbnail 2D, time-series KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Execution Platform Linux … Last modified 03/03/2020 - 18:29 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.proc.ConvertImgNodeFactory%2… … …
Sobel Filter (KNIME) 5 need a thumbnail 2D KNIME Software … Type Component Requires KNIME Execution Platform Linux Mac Windows Implementation … Last modified 03/02/2020 - 11:50 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.filter.SobelNodeFactory%23So… … …
CSBDeep a toolbox for Content-aware Image Restoration (CARE) in Knime 5 KNIME Software … Type Collection Component Requires KNIME Implementation Type plugin Interaction Level … training. See also the Fiji plugin. See more CSBDeep in Knime . has function Image deconvolution Image denoising has … training. See also the Fiji plugin. See more CSBDeep in Knime . … CSBDeep a toolbox for Content-aware Image …
Difference of Gaussians (KNIME) 5 need a thumbnail 2D, time-series KNIME Software … Type Component Requires KNIME Execution Platform Linux Mac Windows Implementation … Last modified 03/03/2020 - 12:05 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.proc.dogdetector.DoGDetector… … …
Dimension Swapper (KNIME) 5 need a thumbnail KNIME Software … Type Component Requires KNIME Execution Platform Linux Mac Windows Implementation … Last modified 03/03/2020 - 18:09 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.misc.dimswap.DimensionSwappe… … …
Interactive Annotator (KNIME) 5 need a thumbnail 2D KNIME Software … Type Component Requires KNIME Execution Platform Linux Mac Windows Implementation … Last modified 03/02/2020 - 22:25 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.io.nodes.annotation.create.OverlayAnnot… … …
Image Normalizer (KNIME) 5 need a thumbnail 2D, time-series KNIME Software … Type Component Requires KNIME Execution Platform Linux Mac Windows Implementation … Last modified 03/03/2020 - 12:37 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.proc.ImgNormalizerNodeFactor… … …
Inverter (KNIME) 5 need a thumbnail KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Execution Platform Linux … Last modified 03/01/2020 - 11:50 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.proc.InverterNodeFactory2%23… … …
Bilateral Filter (KNIME) 5 need a thumbnail 2D, time-series KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Execution Platform Linux … Last modified 03/03/2020 - 18:18 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.filter.nonlinear.BilateralFi… … …
KNIME Variance Filter 5 need a thumbnail KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Execution Platform Linux … Last modified 10/18/2019 - 16:38 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.filter.VarianceFilterNodeFac… … …
KNIME Min Filter 5 need a thumbnail KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Execution Platform Linux … Link https://hub.knime.com/BioML-Konstanz/extensions/org.knime.knip.feature/latest/o… … migration.tool … 4111 … 4196 … … image analysis … migration … Image analysis … Statistics … KNIME Min Filter …
Feature Calculation (KNIME) 5 need a thumbnail 2D, time-series KNIME Image Processing and Analysis Software … Type Workflow Requires KNIME Image Processing and Analysis Execution Platform Linux … download workflow Documentation Link https://hub.knime.com/knime/spaces/Examples/latest/99_Community/01_Image_Proces… … … extraction … Bioimage informatics … Feature Calculation (KNIME) …
Grayscale Reconstruction (KNIME) 5 need a thumbnail 2D KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Execution Platform Linux … Last modified 03/03/2020 - 14:48 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.proc.GrayscaleReconstruction… … …
Image Cropper (KNIME) 5 need a thumbnail 2D KNIME Software … Type Component Requires KNIME Execution Platform Linux Mac Windows Implementation … Last modified 03/03/2020 - 13:58 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.proc.ImgCropperNodeFactory2%… … …
Larva-Tracking (KNIME) 5 need a thumbnail 2D, time-series KNIME Software … Type Workflow Requires KNIME Execution Platform Linux Mac Windows Supported image … 03/01/2020 - 12:37 Download Page https://hub.knime.com/knime/spaces/Examples/latest/99_Community/01_Image_Proces… … … object tracking … Bioimage informatics … Larva-Tracking (KNIME) …
Local Thresholding (KNIME) 5 need a thumbnail 2D, time-series KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Supported image dimension … Last modified 10/16/2019 - 17:22 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.seg.local.LocalThresholderNo… … …
Quantile Filter (KNIME) 5 need a thumbnail 2D, 3D KNIME Software … Type Component Requires KNIME Execution Platform Linux Mac Windows Implementation … Last modified 03/02/2020 - 10:56 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.filter.nonlinear.QuantileFil… … …
Image Writer (KNIME) 5 need a thumbnail 2D, time-series KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Execution Platform Linux … Last modified 03/03/2020 - 18:40 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.io.nodes.imgwriter2.ImgWriter2NodeFacto… … …
Image Reader (KNIME) 5 need a thumbnail 2D, time-series KNIME Software … Type Component Requires KNIME Execution Platform Linux Mac Windows Implementation … Last modified 03/03/2020 - 12:45 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.io.nodes.imgreader2.readfromdialog.ImgR… … …
KNIME Fill Holes 5 need a thumbnail 2D KNIME Software … Type Component Requires KNIME Execution Platform Mac Windows Implementation Type … Last modified 10/16/2019 - 15:28 Download Page http://tech.knime.org/community/image-processing Documentation Link http://tech.knime.org/community/image-processing … migration.tool … 4232 …
Splitter (KNIME) 5 need a thumbnail 3D, time-series KNIME Software … Type Component Requires KNIME Execution Platform Linux Mac Windows Implementation … Last modified 03/02/2020 - 11:05 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.misc.splitter.Splitter2NodeF… … …
GraphCut 2D (KNIME) 5 need a thumbnail 2D, 3D KNIME Software … Type Component Requires KNIME Execution Platform Linux Mac Windows Implementation … Last modified 03/03/2020 - 12:50 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.seg.graphcuts.GraphCutNodeFa… … …
ImageJ2 Plugin KNIME 4 need a thumbnail ImageJ2 Software … Last modified 03/03/2020 - 14:01 Download Page http://tech.knime.org/community/image-processing Documentation Link https://www.knime.com/community/imagej … migration.tool … migration … ImageJ2 Plugin KNIME …
Projector (KNIME) 4 need a thumbnail KNIME Software … Type Workflow Requires KNIME Execution Platform Linux Mac Windows Implementation … Last modified 03/01/2020 - 17:25 Download Page http://tech.knime.org/community/image-processing … migration.tool … 4185 … … Image visualisation … Bioimage informatics … Projector (KNIME) …
Mophological Image Operations 4 need a thumbnail KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Execution Platform Linux … Last modified 10/16/2019 - 16:29 Download Page http://tech.knime.org/community/image-processing Documentation Link https://hub.knime.com/BioML-Konstanz/extensions/org.knime.knip.feature/latest/o… … migration.tool … 4168 … 4155 … …
KNIME Convex Hull 4 need a thumbnail KNIME Convex Hull Software … Type Component Requires KNIME Convex Hull Interaction Level Automated … Last modified 12/20/2018 - 19:26 Download Page http://tech.knime.org/community/image-processing … migration.tool … migration … KNIME Convex Hull …
Maximum Finder (KNIME) 4 need a thumbnail 2D Software … Last modified 03/02/2020 - 15:41 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.proc.maxfinder.MaximumFinder… … … segmentation … Bioimage informatics … Maximum Finder (KNIME) …
Image Calculator (KNIME) 4 need a thumbnail 2D, time-series KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Execution Platform Linux … Last modified 03/03/2020 - 18:59 Download Page http://tech.knime.org/community/image-processing Documentation Link … processing … Bioimage informatics … Image Calculator (KNIME) …
Resampler (KNIME) 4 need a thumbnail Software … Last modified 03/01/2020 - 18:02 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/de.openms.knime.nodes.Resampler.ResamplerNodeFactory … migration.tool … 4184 … migration … Data handling … Resampler (KNIME) …
Seeded Watershed 3 need a thumbnail 2D KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Execution Platform Linux … Last modified 10/17/2019 - 11:18 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.seg.WatershedNodeFactory%23S… Reference …
h-dome Extraction 3 KNIME Software … Type Component Requires KNIME Execution Platform Linux Mac Windows Interaction Level … Last modified 10/18/2019 - 16:24 Download Page http://tech.knime.org/community/image-processing Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.proc.HDomeNodeFactory%23h-Do… … …
Binary Image Operations 3 need a thumbnail 2D KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Execution Platform Linux … - 05:07 Download Page https://nodepit.com/iu/org.knime.knip.feature.feature.group Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.proc.binary.BinaryArithmetic… … …
Multi-Template matching 2.95 need a thumbnail 2D Fiji Software … Python package (Multi-Template-Matching on PyPI) and as a KNIME workflow (via KNIME Hub). has function Object detection Pattern recognition … Link Article in BMC Bioinformatics Python package on PyPI KNIME workflow … LThomas … Thomas Laurent …
KNIME 2 need a thumbnail Software … 10:53 Last modified 09/13/2017 - 10:53 … migration.tool … KNIME …
LoG Spot Detection (TrackMate) 2 need a thumbnail Spot Detection (KNIME) Software … Type Component Requires Spot Detection (KNIME) Interaction Level Automated License/Openness I do not … Last modified 09/13/2017 - 12:05 Download Page http://tech.knime.org/community/image-processing … migration.tool … …
Merger 2 need a thumbnail KNIME Image Processing and Analysis Software … Type Component Requires KNIME Image Processing and Analysis Execution Platform Linux … - 14:41 Documentation Link https://nodepit.com/node/org.knime.knip.base.nodes.misc.merger.MergerNodeFactor… … …
FishInspector 2 FishInspector Logo 2D Software … Implementation Type standalone Programming Language Matlab KNIME Workflow Supported image dimension 2D Interaction Level … embryos in glass capillaries require conversion using a KNIME workflow (the workflow is available as well). As a … embryos in glass capillaries require conversion using a KNIME workflow (the workflow is available as well). As a …
MountainsMap 1 need a thumbnail Segmentation of Clustered Cells in MATLAB, Spot Detection (KNIME), MountainsMap Software … Segmentation of Clustered Cells in MATLAB Spot Detection (KNIME) MountainsMap Execution Platform Windows Interaction …
Centromere Recognition and Quantification 1 2D ImageJ, Spot Detection (KNIME) Software … Author A Great Guy Requires ImageJ Spot Detection (KNIME) Programming Language ImageJ Macros Supported image …
ImgLib2 1 need a thumbnail 2D, 3D, multi-channel, time-series ImageJ Software … virtually all existing data containers. It is the basis of KNIME, ImageJ2 and a couple of Fiji plugins. has topic … virtually all existing data containers. It is the basis of KNIME, ImageJ2 and a couple of Fiji plugins. … ImgLib2 …
ImageJ Macro 1 need a thumbnail ImageJ Software … Last modified 09/13/2017 - 12:02 Download Page http://tech.knime.org/community/image-processing … migration.tool … …
Multi Otsu Threshold 1 need a thumbnail 2D, 3D, multi-channel, time-series ImageJ, KNIME Multilevel Thresholding, Histogram Software … Type Component Requires ImageJ KNIME Multilevel Thresholding Histogram Execution Platform …
Convolver 1 need a thumbnail Fast Fourier Transform Software … Last modified 09/13/2017 - 12:06 Download Page http://tech.knime.org/community/image-processing … migration.tool … …
CLAHE 1 need a thumbnail Histogram Equalization Software … Last modified 09/13/2017 - 12:08 Download Page http://tech.knime.org/community/image-processing … migration.tool … …
FindFoci 1 need a thumbnail 2D, 3D Spot Detection (KNIME) Software … Type Component Author Alex Herbert Requires Spot Detection (KNIME) Execution Platform Linux Mac Windows Implementation …
Distance Map 1 need a thumbnail Distance Map Software … Last modified 09/13/2017 - 12:07 Download Page http://tech.knime.org/community/image-processing … migration.tool … …
Count Chromosomes 1 need a thumbnail Count Chromosomes Software … Last modified 09/13/2017 - 12:03 Download Page http://tech.knime.org/community/image-processing … migration.tool … …
ICY Anisotropic Filter 1 need a thumbnail KNIME Anisotropic Diffusion Software … Type Component Author Alexandre Dufour Sorin Pop Requires KNIME Anisotropic Diffusion Execution Platform Linux Mac …
ClearVolume 0.989 3D, multi-channel, time-series ClearCL, ClearGL Software … ClearVolume  is integrated into the Fiji/ImageJ2/KNIME ecosystem. You can now open your stacks with  … ClearVolume  is integrated into the Fiji/ImageJ2/KNIME ecosystem. You can now open your stacks with  …
Content type: Training Material
Relevance requires Content type Excerpt
KNIME Workflow 4 Training Material … KNIME workflow construction hands-on, example workflows in the linked materials 28 views Tool(s) used for training KNIME URL material Author(s) Horn Martin Trainer(s)/ … Event /neubias-ts3 … Perrine … Horn Martin … basic_html … KNIME workflow construction hands-on, example workflows in …
Content type:
Relevance requires Content type Excerpt
3 … KNIME Workflow … KNIME Workflow …
Content type: Dataset
Relevance requires Content type Excerpt
Medaka embryo in 96 well plate - Widefield Brightfield 1 Preview Dataset … and in KNIME  … https://github.com/LauLauThom/MultipleTemplateMatching-KNIME Image has format jpg has location On Zenodo has … and in KNIME  … https://github.com/LauLauThom/MultipleTemplateMatching-KNIME … Medaka embryo in 96 well plate - Widefield Brightfield …
Zebrafish larvae - Widefiled/Brightfield 0.989 Dataset … and in KNIME  … https://github.com/LauLauThom/MultipleTemplateMatching-KNIME Image has format tif has location On Zenodo has … and in KNIME  … https://github.com/LauLauThom/MultipleTemplateMatching-KNIME … Zebrafish larvae - Widefiled/Brightfield …