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The Sholl technique is used to describe neuronal arbors. This plugin can perform Sholl directly on 2D and 3D grayscale images of isolated neurons. Its internal algorithm to collect data is based upon how Sholl analysis is done by hand — it creates a series of concentric shells (circles or spheres) around the focus of a neuronal arbor, and counts how many times connected voxels defining the arbor intersect the sampling shells. The major advantages of this plugin over other implementations are:

From the plugin inline help:

" Align RGB planes v1.7 by G.Landini Changes the alignment of the RGB planes independently.

Automatic finding of image features are very convenient for registering two images to align them in proper orientation. Two image plugins are implemented for extracting image features and are placed as menu items at: [Plugins > Feature Extraction > Extract SIFT Correspondences] and [Plugins > Feature Extraction > Extract MOPS Correspondences].

For more details, see the linked page in Fiji wiki. For details about SIFT algorithm, see 2569. For more details about MOPS algorithm, see 2570.

Wavelet-based statistical parametric mapping, a toolbox for SPM that incorporates powerful wavelet processing and spatial domain statistical testing for the analysis of fMRI data.

A toolbox to chain image analysis processes.

This package implements the interscale orthonormal wavelet thresholding algorithm based on the SURE-LET principle. A multichannel extension is also available. Java Applets are available too.

Applies average filtering to images in n-dimensions

Library used by Micro-Manager for fast acquisition.

paintObjects

Automatically crops an image by finding the smallest bounding box which still contains all pixels of the specified value.

Options include Pixel values, Margin, and more...

This KNIME node is included in the KNIME Image Processing Extension