Contents

Wavelet Spot Detector for Blocks, to integrate in Icy protocols.

MultiLevel Thresholded Landweber (MLTL) algorithm is an accelerated version of the TL algorithm that was specifically developped for deconvolution problems with a wavelet-domain regularization

Saves a RGB image (typically a screenshot) into a CMYK TIFF (required by publishers for high-fidelity color printing).

TrackProcessor for the TrackManager plugin that allows importing/exporting tracks. Input and output files are in the .xml format used for the ISBI'2012 Particle Tracking Challenge. Tracks are loaded/exported in/from the TrackManager plugin

This originally came from this module.

Currently it is available as the ilastik CellProfiler plugin (see this image.sc post for details).

Provides a selection of spatial, separable and customizable filters in 1D and 2D, with OpenCL implementation if supported.

A complete parametric framework and set of MATLAB tools for computing steerable wavelet frames in 2-D.

Released in 2007, there is a newer "remastered" version "DeconvolutionLab2" (2017)

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Coloc 2 is Fiji's plugin for colocalization analysis. It implements and performs the pixel intensity correlation over space methods of Pearson, Manders, Costes, Li and more, for scatterplots, analysis, automatic thresholding and statistical significance testing.

Image segmentation by representative colors selection. Two versions are available :

• thresholding
• positive and negative colors selection and SVM learning

Anisotropic filter implements the classical Coherence Enhancing Diffusion Filter [Weickert]. The plugins works on the first band of a 2D, 3D and 4D sequence. 2D and 3D algorithms are proposed. For the 3D case 2 options are available: CED 1D option is the classical filter that acts mainly on the most homogeneous structure direction; CED 2D option acts on the tangential plane of the structure.

View your multi-channel data as a montage with one image per channel plus a merged, color channel (useful to create figures for communication). 

This viewer plugin will split all N channels of the active sequence into a montage of N+1 images, with one image for each channel, plus an additionnal color (merge) rendering.