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Quantitative Evaluation of Multicellular Movements in Drosophila Embryo Training Material
ImageJ Macro Language Training Material
Kota Miura (ed) "Bioimage Data Analysis", Textbook, Wiley Training Material
https://aivia.wikispaces.com/Welcome+to+the+Aivia+Wiki Training Material
Video Tutorial are available in the website Training Material
Understanding the fundamental mechanisms of biofilms development and dispersal: BIAM (Biofilm Intensity and Architecture Measurement), a new tool for studying biofilms as a function of their architecture and fluorescence intensity Training Material
Rafael C. Gonzalez, Richard E. Woods."Digital Image Processing", Pearson, 2008 Training Material
NEUBIAS TS1 Training Material
Introduction to ImageJ macro language Training Material
Simultaneous ImageJ script and plugin development Training Material
ImageJ1 - ImageJ2 transition cheat sheet Training Material
http://bio3d.colorado.edu/imod/#Guides Training Material
http://scikit-learn.org/stable/presentations.html Training Material
https://bitbucket.org/rhenriqueslab/nanoj-squirrel/downloads/ Training Material
http://www.sci.utah.edu/software/fluorender.html Training Material
https://www.youtube.com/watch?v=1rC8iAk6-3g Training Material
http://www.vmtk.org/documentation/presentations.html Training Material
http://www.vmtk.org/tutorials/ Training Material
https://imagej.net/Getting_started_with_MaMuT Training Material
http://imagejdocu.tudor.lu/doku.php?id=plugin:utilities:figurej:start Training Material
https://github.com/NifTK/NiftyNet/tree/dev/demos Training Material
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About BISE Basic page
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2D bright field yeast cell images with ground truth annotations Dataset 2D bright field yeast cell images
Arabidopsis thaliana seedlings Dataset thumbnail of Arabidopsis thaliana seedlings
Microtubules 3D Dataset 3D microtubules
Artemia color images Dataset artemia color image
leaves stained with gfp and rfp Dataset leave infection image
Arabidopsis plants (high resolution) Dataset arabidopsis plant (high resolution)
Arabidopsis plants (low resolution) Dataset arabidopsis plant (low resolution)
CREMI challenge Dataset cremi samples A and B
Diadem challenge Dataset Diadem challenge
ICY batch pixel density measurement Software Component Automated Free and open source
Binary Image Operations Software need a thumbnail KNIME Image Processing and Analysis Component Automated I do not know
Transform Virtual Stack Slices Software need a thumbnail ImageJ Component Automated I do not know
Transform Virtual Stack Slices Software need a thumbnail ImageJ Component Automated I do not know
Marker-controlled Watershed Software need a thumbnail Watershed, watershed Component Automated I do not know Morphological operation
Marker-controlled Watershed Software need a thumbnail Watershed, watershed Component Automated I do not know Morphological operation
CompuCell3D Software Collection Manual Free and open source Synthetic image generation, Plotting In-silico reconstruction
Performing a Fluorescence Recovery after Photobleaching (FRAP) experiment Software ImageJ, Excel Workflow Automated I do not know Confocal fluorescence microscopy
Performing a Fluorescence Recovery after Photobleaching (FRAP) experiment Software ImageJ, Excel Workflow Automated I do not know Confocal fluorescence microscopy
ImarisSpots Software need a thumbnail Segmentation of Clustered Cells in MATLAB, Imaris Component Automated I do not know
ImarisSpots Software need a thumbnail Segmentation of Clustered Cells in MATLAB, Imaris Component Automated I do not know
Intensity Projection Software need a thumbnail Projection Component Automated I do not know
Intensity Projection Software need a thumbnail Projection Component Automated I do not know
VSI File Extractor Software VSI screenshot ActionBar Component Automated I do not know
2D spots counting using KNIME Software KNIME Image Processing and Analysis Workflow Automated Free and open source Spot detection
Delaunay Voronoi Software need a thumbnail ImageJ, Grid, Distance Map Component Automated I do not know
Delaunay Voronoi Software need a thumbnail ImageJ, Grid, Distance Map Component Automated I do not know
Delaunay Voronoi Software need a thumbnail ImageJ, Grid, Distance Map Component Automated I do not know
Delaunay Voronoi Software need a thumbnail ImageJ, Grid, Distance Map Component Automated I do not know
SPIM Registration Method Software need a thumbnail ImageJ Component Automated I do not know
SPIM Registration Method Software need a thumbnail ImageJ Component Automated I do not know
Moment thresholding Software need a thumbnail ImageJ, Aphelion Component Automated I do not know
Moment thresholding Software need a thumbnail ImageJ, Aphelion Component Automated I do not know
Moment thresholding Software need a thumbnail ImageJ, Aphelion Component Automated I do not know
ImmunoMembrane Software ImageJ Component Semi-automated Free and open source Cell segmentation, Object classification Digital histology
Differentials Software need a thumbnail ImageJ Component Automated I do not know
Image Expression Parser Software need a thumbnail ImageJ Component Automated I do not know
Image Expression Parser Software need a thumbnail ImageJ Component Automated I do not know
Texture Analyzer Software need a thumbnail Component Automated I do not know
R Project for Statistical Computing Software need a thumbnail
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Colour merge Software need a thumbnail ImageJ Component Automated I do not know
Variational algorithms to remove stationary noise Software need a thumbnail Component Automated I do not know
Neuroconductor Software R Project for Statistical Computing Collection Automated, Semi-automated Free and open source Image segmentation Bioimage informatics
2D tracking using KNIME and Fiji Software KNIME Image Processing and Analysis, Fiji Workflow Semi-automated Free and open source Object tracking
2D tracking using KNIME and Fiji Software KNIME Image Processing and Analysis, Fiji Workflow Semi-automated Free and open source Object tracking
Align Image by line ROI Software Fiji Component Manual Free and open source Image registration Bioimage informatics
Snakuscule Software need a thumbnail ImageJ, Active Contours Component Automated I do not know
Snakuscule Software need a thumbnail ImageJ, Active Contours Component Automated I do not know
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Correct 3D drift Software need a thumbnail Component Automated I do not know
scipy Software need a thumbnail
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Feature Calculation Software need a thumbnail Component Automated I do not know
PIL Software need a thumbnail
Particle tracking with OMERO Software OMERO, OMERO.matlab Collection Semi-automated I do not know Object tracking
Particle tracking with OMERO Software OMERO, OMERO.matlab Collection Semi-automated I do not know Object tracking
Active Cells Tracker Software need a thumbnail Active Contours Component Automated I do not know
Active Cells Tracker Software need a thumbnail Active Contours Component Automated I do not know
Extract Images From PDF Software need a thumbnail ImageJ Component Automated I do not know
Extract Images From PDF Software need a thumbnail ImageJ Component Automated I do not know
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numpy Software need a thumbnail
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ICS tools Software need a thumbnail Component Automated I do not know
MATLAB Optimization toolbox Software need a thumbnail
ec-clem autofinder Software logo autofinder Component Semi-automated Free and open source Image registration, Rigid registration, Affine registration Correlative Light and Electron Microscopy
3D object based colocalization using KNIME Software KNIME Image Processing and Analysis Workflow Automated I do not know Object-based colocalisation, Colocalisation analysis
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PureDenoise Software need a thumbnail ImageJ Component Automated I do not know
SIOX: Simple Interactive Object Extraction Software need a thumbnail ImageJ Component Automated I do not know
SIOX: Simple Interactive Object Extraction Software need a thumbnail ImageJ Component Automated I do not know
ImageJ Bandpass filter Software ImageJ bandpass screenshot ImageJ Component Automated I do not know
MATLAB Statistics toolbox Software need a thumbnail
Protocols Software need a thumbnail
Lymphatic Vessel Density calculation Software MATLAB, Pandore, Moment thresholding Workflow Manual I do not know Image segmentation Digital histology
Lymphatic Vessel Density calculation Software MATLAB, Pandore, Moment thresholding Workflow Manual I do not know Image segmentation Digital histology
Lymphatic Vessel Density calculation Software MATLAB, Pandore, Moment thresholding Workflow Manual I do not know Image segmentation Digital histology
Affine transformation software Software Component Automated Free and open source Affine transformation, Image processing
RodCellJ Software need a thumbnail ImageJ Component Automated I do not know
RodCellJ Software need a thumbnail ImageJ Component Automated I do not know
SpotFinderZ Software need a thumbnail Component Automated I do not know
CSBDeep, a toolbox for Content-aware Image Restoration (CARE) in Fiji Software CARE Fiji Component Semi-automated I do not know Image denoising, Image reconstruction, Image deconvolution, Image projection, Selective plane illumination microscopy reconstruction Light microscopy, Light-sheet microscopy
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Mice Profiler Label Analyser Software need a thumbnail Component Automated I do not know
HK-Means Software need a thumbnail HK-Means Component Automated I do not know
HK-Means Software need a thumbnail HK-Means Component Automated I do not know
SpotFinderM Software need a thumbnail Component Automated I do not know
CSBDeep, a toolbox for Content-aware Image Restoration (CARE) in Knime Software KNIME Collection, Component Semi-automated Image denoising, Image deconvolution Light microscopy, Light-sheet microscopy
Focal Adhesion Analysis Server Software Workflow Automated Free but not open source Object tracking
Mice Profiler Tracker Software need a thumbnail Component Automated I do not know
mcib3d library Software need a thumbnail MereoTopology Component Automated I do not know
mcib3d library Software need a thumbnail MereoTopology Component Automated I do not know
FindFoci Software need a thumbnail Spot Detection Component Automated I do not know
Excel Software need a thumbnail
3D intensity profile Software Fiji Component Automated Free and open source
Angle Helper Software Component Automated, Manual Free and open source Bioimage informatics
Microscope Live 3D Software need a thumbnail Micro-Manager Component Automated I do not know
Microscope Live 3D Software need a thumbnail Micro-Manager Component Automated I do not know
FeatureJ Laplacian Software need a thumbnail Component Automated I do not know Spot detection
Template Matching and Slice Alignment--- ImageJ Plugins Software ImageJ, OpenCV Collection Semi-automated Free and open source Image registration
Template Matching and Slice Alignment--- ImageJ Plugins Software ImageJ, OpenCV Collection Semi-automated Free and open source Image registration
MATLAB CellDetector Software MATLAB, Matlab Image Processing Toolbox Component Semi-automated Free and open source Cell segmentation Digital histology, Fluorescence microscopy, Phase contrast microscopy, Machine learning
MATLAB CellDetector Software MATLAB, Matlab Image Processing Toolbox Component Semi-automated Free and open source Cell segmentation Digital histology, Fluorescence microscopy, Phase contrast microscopy, Machine learning
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Flying Camera Software need a thumbnail Flying Camera Component Automated I do not know
Grid Software need a thumbnail ImageJ, ICY Annotation, Grid Component Automated I do not know
Grid Software need a thumbnail ImageJ, ICY Annotation, Grid Component Automated I do not know
Grid Software need a thumbnail ImageJ, ICY Annotation, Grid Component Automated I do not know
Grid Software need a thumbnail ImageJ, ICY Annotation, Grid Component Automated I do not know
HDF5 Plugin for ImageJ and Fiji Software need a thumbnail Component Automated I do not know
SGP-dec, A Scaled Gradient Projection method for 2D and 3D images deconvolution Software MATLAB, Matlab Image Processing Toolbox Component Semi-automated Free and open source Image deconvolution Confocal fluorescence microscopy, Structured illumination microscopy
SGP-dec, A Scaled Gradient Projection method for 2D and 3D images deconvolution Software MATLAB, Matlab Image Processing Toolbox Component Semi-automated Free and open source Image deconvolution Confocal fluorescence microscopy, Structured illumination microscopy
Stochastic Denoising Software need a thumbnail ImageJ Component Automated I do not know
Stochastic Denoising Software need a thumbnail ImageJ Component Automated I do not know
Local Thickness Software need a thumbnail ImageJ, Distance Map, Local Thickness Component Automated I do not know
Local Thickness Software need a thumbnail ImageJ, Distance Map, Local Thickness Component Automated I do not know
Local Thickness Software need a thumbnail ImageJ, Distance Map, Local Thickness Component Automated I do not know
Local Thickness Software need a thumbnail ImageJ, Distance Map, Local Thickness Component Automated I do not know
MTrackJ Software ImageJ, ImageScience.jar Component Automated Free and open source Object tracking
MTrackJ Software ImageJ, ImageScience.jar Component Automated Free and open source Object tracking
cvMatch_Template Software ImageJ, OpenCV Component Semi-automated Free and open source Image segmentation, Pattern recognition Electron microscopy
cvMatch_Template Software ImageJ, OpenCV Component Semi-automated Free and open source Image segmentation, Pattern recognition Electron microscopy
FISHfinder Software MATLAB Collection Automated Free and open source Spot detection
Elastic Alignment and Montage Software need a thumbnail ImageJ Component Automated I do not know
Elastic Alignment and Montage Software need a thumbnail ImageJ Component Automated I do not know
Delayed Snapshot Software need a thumbnail ImageJ Component Automated I do not know
Delayed Snapshot Software need a thumbnail ImageJ Component Automated I do not know
TransformJ Software ImageJ Collection Automated Free and open source Geometrical transformation, Affine transformation
Bioconductor Software Collection I do not know Free and open source Analysis Bioimage informatics, High content screening
ImageJFX Software ImageJFX screen Capture Collection I do not know
RapidSTORM usage tutorial Software RapidSTORM Workflow Semi-automated Free and open source Single molecule localisation Single molecule localization microscopy
Animation 3D Software need a thumbnail Component Automated I do not know
Feature Detector Software need a thumbnail Edge Detection Component Automated I do not know
Feature Detector Software need a thumbnail Edge Detection Component Automated I do not know
Find Maxima Software need a thumbnail Watershed, watershed Component Automated I do not know
Find Maxima Software need a thumbnail Watershed, watershed Component Automated I do not know
Align slices in stack Software ImageJ Component Automated Free and open source Image registration
Splitting clustered cells Software MATLAB, Watershed, watershed Component Automated Free and open source Watershed segmentation
Splitting clustered cells Software MATLAB, Watershed, watershed Component Automated Free and open source Watershed segmentation
Splitting clustered cells Software MATLAB, Watershed, watershed Component Automated Free and open source Watershed segmentation
Extended Depth of Focus Software need a thumbnail ImageJ, Projection Component Automated I do not know
Extended Depth of Focus Software need a thumbnail ImageJ, Projection Component Automated I do not know
Extended Depth of Focus Software need a thumbnail ImageJ, Projection Component Automated I do not know
Histogram Equalization Software need a thumbnail Histogram, Histogram Equalization Component Automated I do not know
Histogram Equalization Software need a thumbnail Histogram, Histogram Equalization Component Automated I do not know
Histogram Equalization Software need a thumbnail Histogram, Histogram Equalization Component Automated I do not know
Adiposoft Software ImageJ Workflow Automated Free and open source Cell segmentation, Image thresholding, Watershed segmentation Digital histology
LOCI Bioformats plugin Software need a thumbnail
Leaf Segmentation using Trainable Weka Segmentation plugin Software Fiji Component Automated Free and open source Image segmentation Machine learning
Otsu Thresholding Software need a thumbnail ImageJ, Histogram Component Automated I do not know
Otsu Thresholding Software need a thumbnail ImageJ, Histogram Component Automated I do not know
Otsu Thresholding Software need a thumbnail ImageJ, Histogram Component Automated I do not know
Import ROI from ImageJ Software need a thumbnail ImageJ Component Automated Free and open source Image classification Imaging
Import ROI from ImageJ Software need a thumbnail ImageJ Component Automated Free and open source Image classification Imaging
TANGO Tools for Analysis of Nuclear Genome Organization Software need a thumbnail Component Automated I do not know
MATLAB Curve Fitting Toolbox Software need a thumbnail
Measure Rosette Area Tool Software ImageJ Workflow Automated, Semi-automated Free and open source Image thresholding Bioimage informatics
Mice Profiler Video Label Maker Software need a thumbnail Component Automated I do not know
Matlab communicator Software need a thumbnail MATLAB Component Automated I do not know
Matlab communicator Software need a thumbnail MATLAB Component Automated I do not know
ImageJ Plugin for Non-Local-Means Filtering Software need a thumbnail Component Automated I do not know
DEFCoN-ImageJ Software Fiji Component Free and open source Object counting, Spot detection Machine learning
Evaluate 3D data with a bead calibration sample Software need a thumbnail RapidSTORM Component Automated I do not know Single molecule localization microscopy
StraightenWorms Software need a thumbnail CellProfiler Component Automated I do not know
MakeProjection Software need a thumbnail CellProfiler Component Automated I do not know
ImageJ Plugin Ridge Detection Software need a thumbnail Component Automated I do not know
PHANTAST for FIJI Software Fiji Component Automated Free and open source Cell segmentation Phase contrast microscopy
CellTrack Software need a thumbnail Collection Free and open source
CytooChip Analysis Software need a thumbnail ImageJ Workflow Automated Free and open source
MonogenicJ Software need a thumbnail ImageJ Component Automated I do not know
CalculateMath Software need a thumbnail CellProfiler Component Automated I do not know
FeatureJ Derivatives Software need a thumbnail Differentials Component Automated I do not know
Mean shift Software Component
PixFRET Software ImageJ Component Automated I do not know
Microscope Remote Software need a thumbnail Micro-Manager Component Automated I do not know
Microscope Remote Software need a thumbnail Micro-Manager Component Automated I do not know
Segmentation Editor Software need a thumbnail ImageJ Component Automated I do not know
Segmentation Editor Software need a thumbnail ImageJ Component Automated I do not know
GDSC Single Molecule Localisation Microscopy Software need a thumbnail Component Automated I do not know
3D confocal noise simulator Software Component Commercial
Evaluate spectral demixing measurement Software need a thumbnail MATLAB, RapidSTORM Component Automated I do not know
Evaluate spectral demixing measurement Software need a thumbnail MATLAB, RapidSTORM Component Automated I do not know
MaskEditor Software need a thumbnail Component Automated I do not know
Shape Index Map Software need a thumbnail ImageJ Component Automated I do not know
Shape Index Map Software need a thumbnail ImageJ Component Automated I do not know
ImageJ Plugin LineageTracker Software need a thumbnail Component Automated I do not know
Spheroid simulator Software Component
Advanced Cell Classifier Software Advanced Cell Classifier Collection Free and open source
Register Virtual Stack Slices Software need a thumbnail Feature Extraction Component Automated I do not know
Register Virtual Stack Slices Software need a thumbnail Feature Extraction Component Automated I do not know
Chart1DCanvas Software need a thumbnail Component Automated I do not know
Simple Neurite Tracer Software need a thumbnail ImageJ, Segmentation of Clustered Cells in MATLAB, 3D Viewer, ICY Annotation Component Semi-automated Free and open source
Simple Neurite Tracer Software need a thumbnail ImageJ, Segmentation of Clustered Cells in MATLAB, 3D Viewer, ICY Annotation Component Semi-automated Free and open source
Simple Neurite Tracer Software need a thumbnail ImageJ, Segmentation of Clustered Cells in MATLAB, 3D Viewer, ICY Annotation Component Semi-automated Free and open source
Simple Neurite Tracer Software need a thumbnail ImageJ, Segmentation of Clustered Cells in MATLAB, 3D Viewer, ICY Annotation Component Semi-automated Free and open source
Simple Neurite Tracer Software need a thumbnail ImageJ, Segmentation of Clustered Cells in MATLAB, 3D Viewer, ICY Annotation Component Semi-automated Free and open source
Skeletonize Software need a thumbnail Component Automated I do not know
BM3D denoising Software Component
BioImageXD Software Screen capture of BioImageXD Collection Manual, Semi-automated Free and open source
Intelligent Imaging Software ImageJ Collection Semi-automated Free and open source High content screening
Jython execnet for Icy Software need a thumbnail Component Automated I do not know
Enhance Local Contrast (CLAHE) Software need a thumbnail ImageJ, Histogram Equalization Component Automated I do not know
Enhance Local Contrast (CLAHE) Software need a thumbnail ImageJ, Histogram Equalization Component Automated I do not know
Enhance Local Contrast (CLAHE) Software need a thumbnail ImageJ, Histogram Equalization Component Automated I do not know
MosaicIA Software need a thumbnail Fiji Component Automated I do not know
Quality metric of 3D SPIM stacks Software Component Free and open source
FISH-quant Software Matlab Image Processing Toolbox, MATLAB, MATLAB Optimization toolbox, MATLAB Statistics toolbox Component Automated I do not know Spot detection
FISH-quant Software Matlab Image Processing Toolbox, MATLAB, MATLAB Optimization toolbox, MATLAB Statistics toolbox Component Automated I do not know Spot detection
FISH-quant Software Matlab Image Processing Toolbox, MATLAB, MATLAB Optimization toolbox, MATLAB Statistics toolbox Component Automated I do not know Spot detection
FISH-quant Software Matlab Image Processing Toolbox, MATLAB, MATLAB Optimization toolbox, MATLAB Statistics toolbox Component Automated I do not know Spot detection
ROI image process tutorial 2 Software need a thumbnail Processing Component Automated I do not know
ROI image process tutorial 2 Software need a thumbnail Processing Component Automated I do not know
Cover Maker Software need a thumbnail ImageJ Component Automated I do not know
Cover Maker Software need a thumbnail ImageJ Component Automated I do not know
ABSnake Software need a thumbnail Segmentation of Clustered Cells in MATLAB, ImageJ Component Automated I do not know
ABSnake Software need a thumbnail Segmentation of Clustered Cells in MATLAB, ImageJ Component Automated I do not know
jMathPlot Software need a thumbnail
Segmentation and quantification of subcellular structures in fluorescence microscopy images using Squassh Software ImageJ, Squassh Workflow Semi-automated Free and open source Image segmentation, Object-based colocalisation, Colocalisation analysis Fluorescence microscopy
Segmentation and quantification of subcellular structures in fluorescence microscopy images using Squassh Software ImageJ, Squassh Workflow Semi-automated Free and open source Image segmentation, Object-based colocalisation, Colocalisation analysis Fluorescence microscopy
Interactive Image Viewer Software need a thumbnail display Component Automated I do not know
Interactive Image Viewer Software need a thumbnail display Component Automated I do not know
Straighten Software need a thumbnail ImageJ Component Automated I do not know
Straighten Software need a thumbnail ImageJ Component Automated I do not know
Hough Circles Software need a thumbnail ImageJ Component Automated I do not know
ImageScience.jar Software need a thumbnail
ADAPT Software ADAPT logo Component I do not know
Segmentation of Clustered Cells in MATLAB Software MATLAB Component Automated Free and open source Cell segmentation, Watershed segmentation, Morphological operation Fluorescence microscopy
Stack Rotation by Angle Software need a thumbnail Component Automated I do not know
Projection Software need a thumbnail Projection Component Automated I do not know
Projection Software need a thumbnail Projection Component Automated I do not know
iterative closest point registration Software need a thumbnail Component Automated I do not know
Jama Software need a thumbnail JDK Collection Free and open source
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Localization microscopy filtering using PALMsiever Software need a thumbnail PALMsiever Workflow Automated I do not know
Microscope Snapper Software need a thumbnail Micro-Manager Component Automated I do not know
Microscope Snapper Software need a thumbnail Micro-Manager Component Automated I do not know
CalculateStatistics Software need a thumbnail CellProfiler Component Automated I do not know
BiDiFuse Software need a thumbnail Component Automated I do not know
Tracking2.0 Software need a thumbnail
Drift correction using PALMsiever Software need a thumbnail PALMsiever Workflow Automated I do not know Drift correction Super-resolution microscopy
Median Filter Software need a thumbnail Component Automated I do not know
Median Filter Software need a thumbnail Component Automated I do not know
Pink / Statistics Software need a thumbnail PINK Component Automated I do not know
Fourier Ring Correlation Software need a thumbnail Fourier Ring Correlation Component Automated I do not know
Python Software need a thumbnail
nothing Software need a thumbnail
DBSCAN clustering using PALMsiever Software need a thumbnail PALMsiever Workflow Automated I do not know Cell segmentation Single molecule localization microscopy
IdentifyDeadWorms Software need a thumbnail CellProfiler Component Automated I do not know
Statistical Region Merging Software need a thumbnail ImageJ Component Automated I do not know
Statistical Region Merging Software need a thumbnail ImageJ Component Automated I do not know
MorphoLibJ Software several steps of morphological segmentation of plant tissue using MorphoLibJ. ImageJ Component Automated, Semi-automated Free and open source Image segmentation, Cell segmentation, Watershed segmentation, Object feature extraction, Shape features, Morphological operation, Object counting Bioimage informatics, Microscopy
ImagePy Software Python Collection Automated, Manual, Semi-automated Free and open source Image segmentation, Data handling, Image processing, Visualisation, Analysis Bioimage informatics
Spotsizer Software screenshot of the spotsizer gui nothing Collection Free but not open source
Generate animations from image data Software need a thumbnail Imaris, Imaris Workflow Automated I do not know
Generate animations from image data Software need a thumbnail Imaris, Imaris Workflow Automated I do not know
Screen shot Software need a thumbnail Screen shot Component Automated I do not know
Screen shot Software need a thumbnail Screen shot Component Automated I do not know
CreaTools Software need a thumbnail ITK Component Automated I do not know
Grayscale granulometry Software granulometry Component Automated I do not know Morphological operation, Analysis Microscopy
Log3D Software ImageJ Component Automated Free and open source Spot detection, Image processing, Image convolution
Tracing data using PALMsiever Software need a thumbnail PALMsiever Workflow Automated I do not know
ROI image process tutorial 1 Software need a thumbnail Processing Component Automated I do not know
ROI image process tutorial 1 Software need a thumbnail Processing Component Automated I do not know
Spline Deformation Generator Software need a thumbnail ImageJ Component Automated I do not know
Spline Deformation Generator Software need a thumbnail ImageJ Component Automated I do not know
MultiStackReg Software need a thumbnail Component Automated I do not know
GIMP Software Collection Free and open source Conversion, Image processing
Measure cell volume over time Software ImageJ, Imaris Workflow Semi-automated I do not know Cell tracking
Measure cell volume over time Software ImageJ, Imaris Workflow Semi-automated I do not know Cell tracking
Merger Software need a thumbnail Component Automated I do not know
KMeans Color Quantization Software need a thumbnail Component Automated I do not know
Manual tracking with TrackMate Software Fiji Component Manual Free and open source Object tracking
Super-Resolution Radial Fluctuations (SRRF) Software Comparison TIRF - SRRF ImageJ Component Free and open source Image deconvolution, Image denoising Super-resolution microscopy
3D affine transformation based on paired points Software Fiji Component Automated Free and open source Affine transformation, Linear transformation
Microscope Advanced Acquisition Software need a thumbnail Micro-Manager Component Automated I do not know
Microscope Advanced Acquisition Software need a thumbnail Micro-Manager Component Automated I do not know
Script Editor Software need a thumbnail Script Editor Component Automated I do not know
Script Editor Software need a thumbnail Script Editor Component Automated I do not know
Morpholeaf Software FreeD Component Automated, Semi-automated I do not know Image registration, Image feature detection Bioimage informatics
matplotlib Software need a thumbnail
ImageJ Software logo ImageJ Collection Semi-automated, Manual, Automated Free and open source
Myotracker Software Fiji Workflow Semi-automated Free and open source Bright field microscopy
DisplayDensityPlot Software need a thumbnail CellProfiler Component Automated I do not know
Interactive Rigid Software need a thumbnail ImageJ Component Automated I do not know
Interactive Rigid Software need a thumbnail ImageJ Component Automated I do not know
Mosaic Suite Software need a thumbnail Component Automated I do not know
MATLAB Signal Processing Toolbox Software need a thumbnail
JACoP Software example of partial colocalisation from reference publication ImageJ Component Automated, Semi-automated Free and open source Object-based colocalisation, Object-based colocalisation, Pixel-based colocalisation, Colocalisation analysis, Colocalisation analysis Fluorescence microscopy
idTracker: Tracking animals Software MATLAB Component Automated I do not know Object tracking
H2 database Software need a thumbnail Component Automated I do not know
Moving Least Squares Software need a thumbnail ImageJ Component Automated I do not know
Moving Least Squares Software need a thumbnail ImageJ Component Automated I do not know
MosaicSuit Software need a thumbnail Spot Detection Component Automated I do not know
bftools Software need a thumbnail
Worm Toolbox: High.throughput screening of C. elegans Software CellProfiler Collection Semi-automated Free and open source
RelateObjects Software need a thumbnail CellProfiler Component Automated I do not know
2D-3D distributed parallel region competition segmentation Software need a thumbnail Component Automated I do not know
GNU Parallel Software need a thumbnail
Cell segmentation in phase contrast images Software initialisation MATLAB Component Automated I do not know Active contours, Cell segmentation, Object tracking, Cell tracking Phase contrast microscopy
Animated overlay tutorial Software need a thumbnail Component Automated I do not know
GrayToColor Software need a thumbnail CellProfiler, channel Component Automated I do not know
GrayToColor Software need a thumbnail CellProfiler, channel Component Automated I do not know
DeconvolutionLab2 Software need a thumbnail Component Automated I do not know
ImageMagick Software need a thumbnail
Zebrafish Embryo Tool Software ImageJ Workflow Semi-automated Free and open source Alignment construction Fluorescence microscopy
Voronoi Segmentation (KNIME) Software need a thumbnail KNIME Component Automated I do not know Image segmentation, Object detection Digital histology
Oriented Contours Software need a thumbnail Component Automated I do not know
Distance Analysis (DiAna) Software Fiji Component Automated Free and open source Colocalisation analysis Bioimage informatics
Libtiff Software need a thumbnail
MATLAB Image Segmentation Tutorial Software MATLAB, Matlab Image Processing Toolbox Component Automated Free and open source Image segmentation
MATLAB Image Segmentation Tutorial Software MATLAB, Matlab Image Processing Toolbox Component Automated Free and open source Image segmentation
ImarisMeasurementPro Software need a thumbnail Imaris Component Automated I do not know
RescaleIntensity Software need a thumbnail CellProfiler Component Automated I do not know
WaveTracer Software need a thumbnail Component Automated Commercial
Python 2.7 Software need a thumbnail
DNA MicroArray Image Processing Case Study Software MATLAB, Matlab Image Processing Toolbox, MATLAB Signal Processing Toolbox Workflow Semi-automated Free and open source Image segmentation, Spot detection
DNA MicroArray Image Processing Case Study Software MATLAB, Matlab Image Processing Toolbox, MATLAB Signal Processing Toolbox Workflow Semi-automated Free and open source Image segmentation, Spot detection
DNA MicroArray Image Processing Case Study Software MATLAB, Matlab Image Processing Toolbox, MATLAB Signal Processing Toolbox Workflow Semi-automated Free and open source Image segmentation, Spot detection
Save as animated gif Software need a thumbnail ImageJ Component Automated I do not know
Save as animated gif Software need a thumbnail ImageJ Component Automated I do not know
Ovuscule Software need a thumbnail ImageJ, Active Contours Component Automated I do not know
Ovuscule Software need a thumbnail ImageJ, Active Contours Component Automated I do not know
PSF Lab Software need a thumbnail PSF Generator Component Automated I do not know
Chainer Software Python Collection Free and open source
Kymoquant Software ImageJ Component Automated Free and open source
ExpandOrShrinkObjects Software need a thumbnail CellProfiler, dilate, erode Component Automated I do not know
ExpandOrShrinkObjects Software need a thumbnail CellProfiler, dilate, erode Component Automated I do not know
ExpandOrShrinkObjects Software need a thumbnail CellProfiler, dilate, erode Component Automated I do not know
ROI Intensity Evolution Software need a thumbnail Histogram Component Automated I do not know
ROI Intensity Evolution Software need a thumbnail Histogram Component Automated I do not know
StabiTissue Software need a thumbnail Component Automated I do not know
QCAnet Software Python 2.7, Chainer, matplotlib, numpy, scikit-image Component Free and open source Image segmentation Fluorescence microscopy, Machine learning
QCAnet Software Python 2.7, Chainer, matplotlib, numpy, scikit-image Component Free and open source Image segmentation Fluorescence microscopy, Machine learning
QCAnet Software Python 2.7, Chainer, matplotlib, numpy, scikit-image Component Free and open source Image segmentation Fluorescence microscopy, Machine learning
QCAnet Software Python 2.7, Chainer, matplotlib, numpy, scikit-image Component Free and open source Image segmentation Fluorescence microscopy, Machine learning
QCAnet Software Python 2.7, Chainer, matplotlib, numpy, scikit-image Component Free and open source Image segmentation Fluorescence microscopy, Machine learning
Colony Blob Count Tool Software ImageJ Workflow Semi-automated Free and open source Object counting Bright field microscopy
RunImageJ Software need a thumbnail ImageJ, CellProfiler Component Automated I do not know
RunImageJ Software need a thumbnail ImageJ, CellProfiler Component Automated I do not know
Track Processor Instant Speed Software need a thumbnail display, Track Manager Component Automated I do not know
Track Processor Instant Speed Software need a thumbnail display, Track Manager Component Automated I do not know
Track Processor Instant Speed Software need a thumbnail display, Track Manager Component Automated I do not know
Analyze Particles Software need a thumbnail ImageJ, Fiji Component Automated I do not know Image feature detection Microscopy
Analyze Particles Software need a thumbnail ImageJ, Fiji Component Automated I do not know Image feature detection Microscopy
Fourier Bandpass Filter Software need a thumbnail ImageJ Component Semi-automated
HDF5 plugin for Fiji and ImageJ Software ImageJ, Fiji Component Automated Free and open source
HDF5 plugin for Fiji and ImageJ Software ImageJ, Fiji Component Automated Free and open source
MeasureObjectNeighbors Software need a thumbnail CellProfiler Component Automated I do not know
Track Processor Intensity Profile Software need a thumbnail display, Intensity Profile, Track Manager Component Automated I do not know
Track Processor Intensity Profile Software need a thumbnail display, Intensity Profile, Track Manager Component Automated I do not know
Track Processor Intensity Profile Software need a thumbnail display, Intensity Profile, Track Manager Component Automated I do not know
Track Processor Intensity Profile Software need a thumbnail display, Intensity Profile, Track Manager Component Automated I do not know
Voronoi ImageJ Software need a thumbnail Segmentation of Clustered Cells in MATLAB Component Automated I do not know
Temporal Medial Filter Software need a thumbnail Component Automated Free and open source
SLOTH Software Python, matplotlib, numpy, scipy Collection Semi-automated Free and open source Object tracking Fluorescence microscopy
SLOTH Software Python, matplotlib, numpy, scipy Collection Semi-automated Free and open source Object tracking Fluorescence microscopy
SLOTH Software Python, matplotlib, numpy, scipy Collection Semi-automated Free and open source Object tracking Fluorescence microscopy
SLOTH Software Python, matplotlib, numpy, scipy Collection Semi-automated Free and open source Object tracking Fluorescence microscopy
Report a Bug Software need a thumbnail ImageJ Component Automated I do not know