JACoP |
24 |
|
2D, 3D, multi-channel, time-series |
ImageJ |
Software |
… … 4345 … 4189 … 4767 … 4762 … 4762 … 4022 … Object-based colocalization … Object-based co-localisation … Object-based colocalization … Object-based co-localisation … Voxel-based colocalisation … Pixel-based colocalization … Pixel-based co-localisation … Manders … |
Coloc 2 |
16 |
|
2D |
Fiji |
Software |
… License GPLv3 Description " Coloc 2 is Fiji's plugin for colocalization analysis. It implements and performs the pixel … testing. Coloc 2 does NOT perform object based colocalization measurements, where objects are first … … 4767 … 4155 … Voxel-based colocalisation … Pixel-based colocalization … Pixel-based co-localisation … Manders … |
3D object based colocalization using KNIME |
15 |
|
3D |
KNIME Image Processing and Analysis |
Software |
… morphological operations in order to remove noise. Colocalization is then defined by overlapping or center point … table processing. Two different types are available. colocalization based on overlapping colocalization based on distance between object centers … |
CellProfiler Examples - Colocalization |
13 |
|
2D |
CellProfiler |
Software |
… Free and open source Description Quote: Measuring the colocalization between fluorescently labeled molecules is a … Link Tutorial http://cellprofiler.org/examples/#Colocalization … migration.tool … 4610 … 4611 … Cellprofiler Developers … 4762 … 4189 … Colocalization analysis … Co-localisation analysis … … |
2-D Colocalisation in Cells |
12 |
|
2D |
CellProfiler, CellProfiler |
Software |
… … Christian "Tischi" Tischer … 4762 … 4189 … Colocalization analysis … Co-localisation analysis … Object-based colocalization … Object-based co-localisation … basic_html … … |
Aivia - Aivia Cloud - Aivia Web |
12 |
|
2D, 3D, multi-channel, time-series |
|
Software |
… … FFT … Wavelet transform … General image analysis … Colocalization analysis … Co-localisation analysis … Object-based colocalization … Object-based co-localisation … Voxel-based colocalisation … Pixel-based colocalization … Pixel-based co-localisation … Manders … |
ICY Colocalization Scatter Plot |
11 |
|
|
|
Software |
… I do not know Description ICY Plugin, creates a colocalization scatter plot based on 2 channels. This plugin … 14:43 Download Page http://icy.bioimageanalysis.org/plugin/colocalization-scatter-plot … migration.tool … Fabrice de … … 4767 … 4155 … Voxel-based colocalisation … Pixel-based colocalization … Pixel-based co-localisation … Manders … |
StatColoc |
9 |
|
2D |
|
Software |
… ago … migration.tool … 4762 … 4767 … 4155 … 4022 … 4196 … Colocalization analysis … Co-localisation analysis … Voxel-based colocalisation … Pixel-based colocalization … Pixel-based co-localisation … Manders … |
Segmentation and quantification of subcellular structures in fluorescence microscopy images using Squassh |
8.981 |
|
2D, 3D |
ImageJ, Squassh |
Software |
… for uneven image background. Further analyses include both colocalization and shape analyses. However, it does not work … Download Page The paper. Documentation Link Fiji-Squassh colocalization plugin notes by Chong Zhang Reference … U … Berger P … Sbalzarini IF … 4762 … 4189 … 4004 … 4022 … Colocalization analysis … Co-localisation analysis … … |
Distance Analysis (DiAna) |
8 |
|
2D, 3D, multi-channel |
Fiji |
Software |
… … Jean-Francois Gilles … Thomas Boudier … 4762 … 4155 … Colocalization analysis … Co-localisation analysis … Bioimage … |
Squassh |
8 |
|
2D, 3D |
Fiji, MosaicSuite |
Software |
… internal intensity distribution, followed by object-based colocalization analysis. The segmentation computed by Region … … 4687 … 4688 … MOSAIC Group … 4762 … 4189 … 4083 … 4022 … Colocalization analysis … Co-localisation analysis … Object-based colocalization … Object-based co-localisation … basic_html … … |
SODA suite |
7 |
|
2D, 3D, multi-channel |
Icy |
Software |
… … 4762 … 4767 … 4155 … 4054 … 4125 … Colocalization analysis … Co-localisation analysis … Voxel-based colocalisation … Pixel-based colocalization … Pixel-based co-localisation … Manders … |
CEM |
7 |
|
2D, 3D, multi-channel |
ImageJ |
Software |
… … Dilatation … Voxel-based colocalisation … Pixel-based colocalization … Pixel-based co-localisation … Manders coefficient … Image feature extraction … Colocalization analysis … Co-localisation analysis … HCS … … |
MIPAV |
6 |
|
2D, 3D, multi-channel, time-series |
|
Software |
… … Image alignment … General image analysis … Object-based colocalization … Object-based co-localisation … Thresholding … … Rendering … Lookup table … Image feature extraction … Colocalization analysis … Co-localisation analysis … Bioimage … |
Colocalizer |
6 |
|
|
Spot Detector (Icy), Icy |
Software |
… … migration.tool … de Chaumont, Fabrice … 4762 … 4022 … Colocalization analysis … Co-localisation analysis … … |
Huygens |
6 |
|
2D, 3D, multi-channel, time-series |
|
Software |
… … 4157 … 4041 … 4198 … 4068 … 4095 … 4022 … 4054 … 4125 … Colocalization analysis … Co-localisation analysis … Object-based colocalization … Object-based co-localisation … PAINT image … |
spot detection and codistribution analysis |
6 |
|
2D, multi-channel |
ImageJ, MATLAB |
Software |
… … 4762 … 4189 … 4035 … 4072 … Colocalization analysis … Co-localisation analysis … Object-based colocalization … Object-based co-localisation … Seed point … |
Point Cloud Analyst (PoCA) |
6 |
|
2D, 3D, multi-channel, time-series |
|
Software |
… … 4772 … 4762 … 4189 … 4083 … 4156 … 4045 … 4125 … 4102 … Colocalization analysis … Co-localisation analysis … Object-based colocalization … Object-based co-localisation … Manual … |
Spots colocalization (ComDet) |
6 |
|
2D, multi-channel |
ImageJ, Jama |
Software |
… open source Description Quote " finding and/or analyzing colocalization of bright intensity spots (cells, particles, … Tutorial) … kota … Eugene Katrukha … 4762 … 4035 … 4155 … Colocalization analysis … Co-localisation analysis … Seed … … Bioimage informatics … Quote " finding and/or analyzing colocalization of bright intensity spots (cells, particles, … |
Leaf Infection Tools |
6 |
|
2D |
ImageJ, GDSC plugins |
Software |
… 4252 … Volker Baecker … 4189 … 4762 … 4155 … Object-based colocalization … Object-based co-localisation … Colocalization analysis … Co-localisation analysis … Bioimage … |
Colocalization Test |
5 |
|
|
ImageJ |
Software |
… 12/20/2018 - 18:39 Download Page https://imagej.net/Colocalization_Test … migration.tool … Daniel James White … basic_html … migration … DEPRECATED Use coloc 2! … Colocalization Test … |
Clus-Doc |
4 |
|
2D, multi-channel |
|
Software |
… both the spatial distribution of a protein as well as its colocalization status. It may be used to quantify signaling activity and protein colocalization at the level of individual proteins. Entry … both the spatial distribution of a protein as well as its colocalization status. It may be used to quantify signaling … |
GDSC plugins |
3 |
|
|
Fiji |
Software |
… … 4786 … Alex Herbert … 4762 … 4035 … 4155 … Colocalization analysis … Co-localisation analysis … Seed … |
Lama: The LocAlization Microscopy Analyzer |
3 |
|
2D, multi-channel |
|
Software |
… LAMA has implemented algorithms for cluster analysis, colocalization analysis, localization precision estimation … Sebastian Malkush … Mike Heilemann … 4762 … 4083 … 4102 … Colocalization analysis … Co-localisation analysis … SMLM … … LAMA has implemented algorithms for cluster analysis, colocalization analysis, localization precision estimation … |
ImarisColoc |
3 |
|
|
Imaris |
Software |
|
MosaicSuite |
2.774 |
|
2D, 3D, time-series |
Fiji, ImageJ 2.x |
Software |
… … 4204 … 4035 … 4004 … 4141 … 4763 … 4105 … 4045 … 4066 … Colocalization analysis … Co-localisation analysis … Tubular … |
Semi-automated quantification of three stages of phagocytosi using ImageJ |
1 |
|
2D |
ImageJ |
Software |
|
MosaicIA |
1 |
|
3D, time-series |
Fiji, MosaicSuite |
Software |
… and I. F. Sbalzarini … 4762 … 4004 … 4156 … 4141 … 4155 … Colocalization analysis … Co-localisation analysis … Manual … |
Measure Image Intensity (deprecated) |
1 |
|
2D, 3D |
CellProfiler |
Software |
… … migration.tool … 4555 … 4772 … 4762 … Colocalization analysis … Co-localisation analysis … … |
Volocity Quantification |
1 |
|
2D, 3D, multi-channel, time-series |
Volocity |
Software |
… … migration.tool … 4772 … 4762 … 4168 … 4155 … Colocalization analysis … Co-localisation analysis … … |
3D ImageJ Suite |
0.893 |
|
2D, 3D |
ImageJ, ImageScience.jar |
Software |
… … Ollion, Jean … 4762 … 4004 … 4074 … 4168 … 4045 … 4155 … Colocalization analysis … Co-localisation analysis … Feature … |
3D Objects Counter |
0.873 |
|
3D |
Fiji, ImageJ |
Software |
… Bolte & F. P. Cordelières, A guided tour into subcellular colocalization analysis in light microscopy, Journal of … |