Search Results

The following table gives you a limited number of fields, you will get further info by clicking on the name of the tool. They are sorted by relevance, which is a simple score counting the number of time your search term appears in the tool description. If the search term appears in title or in tags, it will count twice.
Content type: Software
Relevance Supported Image Dimension requires Content type Excerpt
JACoP 24 example of partial colocalisation from reference publication 2D, 3D, multi-channel, time-series ImageJ Software … … 4345 … 4189 … 4767 … 4762 … 4762 … 4022 … Object-based colocalization … Object-based co-localisation … Object-based colocalization … Object-based co-localisation … Voxel-based colocalisation … Pixel-based colocalization … Pixel-based co-localisation … Manders …
Coloc 2 16 2D Fiji Software … License GPLv3 Description " Coloc 2 is Fiji's plugin for colocalization analysis. It implements and performs the pixel … testing. Coloc 2 does NOT perform object based colocalization measurements, where objects are first … … 4767 … 4155 … Voxel-based colocalisation … Pixel-based colocalization … Pixel-based co-localisation … Manders …
3D object based colocalization using KNIME 15 3D KNIME Image Processing and Analysis Software … morphological operations in order to remove noise. Colocalization is then defined by overlapping or center point … table processing. Two different types are available.  colocalization based on overlapping colocalization based on distance between object centers …
CellProfiler Examples - Colocalization 13 2D CellProfiler Software … Free and open source Description Quote: Measuring the colocalization between fluorescently labeled molecules is a … Link Tutorial http://cellprofiler.org/examples/#Colocalization … migration.tool … 4610 … 4611 … Cellprofiler Developers … 4762 … 4189 … Colocalization analysis … Co-localisation analysis … …
2-D Colocalisation in Cells 12 2D CellProfiler, CellProfiler Software … … Christian "Tischi" Tischer … 4762 … 4189 … Colocalization analysis … Co-localisation analysis … Object-based colocalization … Object-based co-localisation … basic_html … …
Aivia - Aivia Cloud - Aivia Web 12 2D, 3D, multi-channel, time-series Software … … FFT … Wavelet transform … General image analysis … Colocalization analysis … Co-localisation analysis … Object-based colocalization … Object-based co-localisation … Voxel-based colocalisation … Pixel-based colocalization … Pixel-based co-localisation … Manders …
ICY Colocalization Scatter Plot 11 need a thumbnail Software … I do not know Description ICY Plugin, creates a colocalization scatter plot based on 2 channels. This plugin … 14:43 Download Page http://icy.bioimageanalysis.org/plugin/colocalization-scatter-plot … migration.tool … Fabrice de … … 4767 … 4155 … Voxel-based colocalisation … Pixel-based colocalization … Pixel-based co-localisation … Manders …
StatColoc 9 need a thumbnail 2D Software … ago … migration.tool … 4762 … 4767 … 4155 … 4022 … 4196 … Colocalization analysis … Co-localisation analysis … Voxel-based colocalisation … Pixel-based colocalization … Pixel-based co-localisation … Manders …
Segmentation and quantification of subcellular structures in fluorescence microscopy images using Squassh 8.981 2D, 3D ImageJ, Squassh Software … for uneven image background. Further analyses include both colocalization and shape analyses. However, it does not work … Download Page The paper. Documentation Link Fiji-Squassh colocalization plugin notes by Chong Zhang Reference … U … Berger P … Sbalzarini IF … 4762 … 4189 … 4004 … 4022 … Colocalization analysis … Co-localisation analysis … …
Distance Analysis (DiAna) 8 2D, 3D, multi-channel Fiji Software … … Jean-Francois Gilles … Thomas Boudier … 4762 … 4155 … Colocalization analysis … Co-localisation analysis … Bioimage …
Squassh 8 2D, 3D Fiji, MosaicSuite Software … internal intensity distribution, followed by object-based colocalization analysis. The segmentation computed by Region … … 4687 … 4688 … MOSAIC Group … 4762 … 4189 … 4083 … 4022 … Colocalization analysis … Co-localisation analysis … Object-based colocalization … Object-based co-localisation … basic_html … …
SODA suite 7 Icy SODA logo 2D, 3D, multi-channel Icy Software … … 4762 … 4767 … 4155 … 4054 … 4125 … Colocalization analysis … Co-localisation analysis … Voxel-based colocalisation … Pixel-based colocalization … Pixel-based co-localisation … Manders …
CEM 7 Myelin 2D, 3D, multi-channel ImageJ Software … … Dilatation … Voxel-based colocalisation … Pixel-based colocalization … Pixel-based co-localisation … Manders coefficient … Image feature extraction … Colocalization analysis … Co-localisation analysis … HCS … …
MIPAV 6 2D, 3D, multi-channel, time-series Software … … Image alignment … General image analysis … Object-based colocalization … Object-based co-localisation … Thresholding … … Rendering … Lookup table … Image feature extraction … Colocalization analysis … Co-localisation analysis … Bioimage …
Colocalizer 6 Spot Detector (Icy), Icy Software … … migration.tool … de Chaumont, Fabrice … 4762 … 4022 … Colocalization analysis … Co-localisation analysis … …
Huygens 6 2D, 3D, multi-channel, time-series Software … … 4157 … 4041 … 4198 … 4068 … 4095 … 4022 … 4054 … 4125 … Colocalization analysis … Co-localisation analysis … Object-based colocalization … Object-based co-localisation … PAINT image …
spot detection and codistribution analysis 6 endosomes and spot neighbors 2D, multi-channel ImageJ, MATLAB Software … … 4762 … 4189 … 4035 … 4072 … Colocalization analysis … Co-localisation analysis … Object-based colocalization … Object-based co-localisation … Seed point …
Point Cloud Analyst (PoCA) 6 Visualization, segmentation and exploration of 3D SMLM data 2D, 3D, multi-channel, time-series Software … … 4772 … 4762 … 4189 … 4083 … 4156 … 4045 … 4125 … 4102 … Colocalization analysis … Co-localisation analysis … Object-based colocalization … Object-based co-localisation … Manual …
Spots colocalization (ComDet) 6 2D, multi-channel ImageJ, Jama Software … open source Description Quote " finding and/or analyzing colocalization of bright intensity spots (cells, particles, … Tutorial) … kota … Eugene Katrukha … 4762 … 4035 … 4155 … Colocalization analysis … Co-localisation analysis … Seed … … Bioimage informatics … Quote " finding and/or analyzing colocalization of bright intensity spots (cells, particles, …
Leaf Infection Tools 6 a leaf with infection pattern 2D ImageJ, GDSC plugins Software … 4252 … Volker Baecker … 4189 … 4762 … 4155 … Object-based colocalization … Object-based co-localisation … Colocalization analysis … Co-localisation analysis … Bioimage …
Colocalization Test 5 need a thumbnail ImageJ Software … 12/20/2018 - 18:39 Download Page https://imagej.net/Colocalization_Test … migration.tool … Daniel James White … basic_html … migration … DEPRECATED Use coloc 2! … Colocalization Test …
Clus-Doc 4 need a thumbnail 2D, multi-channel Software … both the spatial distribution of a protein as well as its colocalization status. It may be used to quantify signaling activity and protein colocalization at the level of individual proteins. Entry … both the spatial distribution of a protein as well as its colocalization status. It may be used to quantify signaling …
GDSC plugins 3 Fiji Software … … 4786 … Alex Herbert … 4762 … 4035 … 4155 … Colocalization analysis … Co-localisation analysis … Seed …
Lama: The LocAlization Microscopy Analyzer 3 2D, multi-channel Software … LAMA has implemented algorithms for cluster analysis, colocalization analysis, localization precision estimation … Sebastian Malkush … Mike Heilemann … 4762 … 4083 … 4102 … Colocalization analysis … Co-localisation analysis … SMLM … … LAMA has implemented algorithms for cluster analysis, colocalization analysis, localization precision estimation …
ImarisColoc 3 need a thumbnail Imaris Software
MosaicSuite 2.774 2D, 3D, time-series Fiji, ImageJ 2.x Software … … 4204 … 4035 … 4004 … 4141 … 4763 … 4105 … 4045 … 4066 … Colocalization analysis … Co-localisation analysis … Tubular …
Semi-automated quantification of three stages of phagocytosi using ImageJ 1 2D ImageJ Software
MosaicIA 1 need a thumbnail 3D, time-series Fiji, MosaicSuite Software … and I. F. Sbalzarini … 4762 … 4004 … 4156 … 4141 … 4155 … Colocalization analysis … Co-localisation analysis … Manual …
Measure Image Intensity (deprecated) 1 need a thumbnail 2D, 3D CellProfiler Software … … migration.tool … 4555 … 4772 … 4762 … Colocalization analysis … Co-localisation analysis … …
Volocity Quantification 1 need a thumbnail 2D, 3D, multi-channel, time-series Volocity Software … … migration.tool … 4772 … 4762 … 4168 … 4155 … Colocalization analysis … Co-localisation analysis … …
3D ImageJ Suite 0.893 need a thumbnail 2D, 3D ImageJ, ImageScience.jar Software … … Ollion, Jean … 4762 … 4004 … 4074 … 4168 … 4045 … 4155 … Colocalization analysis … Co-localisation analysis … Feature …
3D Objects Counter 0.873 need a thumbnail 3D Fiji, ImageJ Software … Bolte & F. P. Cordelières, A guided tour into subcellular colocalization analysis in light microscopy, Journal of …
Content type: Training Material
Relevance requires Content type Excerpt
Deconstructing co-localisation workflows: from co-expression assessment to super-resolved co-distribution analysis 7 Training Material
3D object based colocalisation 5 Training Material
Visualization of 3D images with Matlab 2 Training Material … finally generating a surface rendering for visual colocalization analysis.During the process we will review … finally generating a surface rendering for visual colocalization analysis.During the process we will review …
Hands-on exercises for learning Imaris 2 Training Material … Visualization, spots segmentation, surfaces segmentation, colocalization, spots tracking, Batch, plotting graphs with … Visualization, spots segmentation, surfaces segmentation, colocalization, spots tracking, Batch, plotting graphs with …
Bioimage analysis with Icy 1.95 Training Material
image.sc Forum's recommendation list for Bioimage Analysis self-study materials 1 Training Material … Dan Whites / IPF MPI CBG slides - Quantitative Imaging for Colocalization Analysis Dan Whites / IPF MPI CBG slides - … Dan Whites / IPF MPI CBG slides - Quantitative Imaging for Colocalization Analysis Dan Whites / IPF MPI CBG slides - …
Kota Miura (ed) "Bioimage Data Analysis", Textbook, Wiley 1 Training Material … Vessels: 3D Tubular Network Analysis 10. 3D Quantitative Colocalization Analysis 716 views Tool(s) used for training … Vessels: 3D Tubular Network Analysis 10. 3D Quantitative Colocalization Analysis … Kota Miura (ed) "Bioimage Data …
Content type:
Relevance requires Content type Excerpt
7 … Synonyms Voxel-based colocalisation Pixel-based colocalization Pixel-based co-localisation Manders …
6 … Synonyms Object-based colocalization Object-based co-localisation … Object-based …
5 … Colocalisation analysis Synonyms Colocalization analysis Co-localisation analysis … …