Search Results

The following table gives you a limited number of fields, you will get further info by clicking on the name of the tool. They are sorted by relevance, which is a simple score counting the number of time your search term appears in the tool description. If the search term appears in title or in tags, it will count twice.
Content type: Software
Relevance Supported Image Dimension requires Content type Excerpt
3D ImageJ Suite 14 need a thumbnail 2D, 3D ImageJ, ImageScience.jar Software … …) and edge and symmetry filter 3D Segmentation (iterative thresholding, spots segmentation, watershed, …) 3D hysteresis thresholding with two thresholds (see 2D hysteresis for explanation). 3D simple segmentation with thresholding to label 3D objects (similar to 3D objects …
Maximum Entropy Threshold (ImageJ) 14 need a thumbnail 2D ImageJ Software … where p contains the histogram bin counts. This thresholding is very useful to segment images with few bright … has function Image segmentation Image thresholding has topic Bioimage informatics Additional … migration.tool … 4458 … Jerek Sacha … 4004 … 4046 … 4155 … Thresholding … Clustering-based image thresholding … Bioimage …
Moment thresholding (ImageJ) 12 need a thumbnail 2D, 3D ImageJ Software … paper is 2449 has function Image segmentation Image thresholding has topic Bioimage informatics Entry Curator … … migration.tool … W. Tsai … 4004 … 4046 … 4155 … Thresholding … Clustering-based image thresholding … Bioimage analysis … basic_html … Nico … Image …
Multi Otsu Threshold 12 need a thumbnail 2D, 3D, multi-channel, time-series ImageJ, KNIME Multilevel Thresholding, Histogram Software … Type Component Requires ImageJ KNIME Multilevel Thresholding Histogram Execution Platform Linux Mac Windows … This ImageJ plugin segments the image in classes by thresholding. It uses the same algorithm found in  Otsu Thresholding , but was adapted to output more than 2 classes …
Icy Thresholder 10 need a thumbnail 2D EzPlug SDK, Icy Protocols SDK Software … image or as a region of interest. has function Image thresholding has topic Bioimage informatics Entry Curator … … migration.tool … Dufour Alexandre … 4046 … 4155 … Thresholding … Clustering-based image thresholding … Bioimage analysis … basic_html … czhang … …
Thresholded pixel density 10 need a thumbnail 2D Software … and outputs results as an excel file. has function Image thresholding Object feature extraction has topic Statistics … … 4845 … de Chaumont Fabrice … 4046 … 4074 … 4196 … Thresholding … Clustering-based image thresholding … Feature detection … Image labeling … SURF … …
Mixture Modeling Thresholding 9 need a thumbnail 2D ImageJ, Histogram Software … is represented by two Gaussian curves. has function Image thresholding has topic Bioimage informatics Entry Curator … Documentation Link https://imagej.net/Mixture_Modeling_Thresholding … migration.tool … Christopher Mei, Maxime Dauphin … 4046 … 4155 … Thresholding … Clustering-based image thresholding … Bioimage …
Adaptive Thresholding (EBImage) 9 2D Software … Free and open source has function Adaptative thresholding Cell segmentation Additional keywords local thresholding Entry Curator migration Post date 10/11/2013 - … 05/09/2018 - 21:57 Documentation Link thresh: Adaptive thresholding package EBImage Reference Publication Link Pau …
Auto Threshold 9 2D Fiji Software … Fiji. "Do all" is the great feature... has function Image thresholding has topic Bioimage informatics Entry Curator … 21 … migration.tool … Gabriel Landini … 4046 … 4155 … Thresholding … Clustering-based image thresholding … Bioimage analysis … basic_html … migration … …
Thresholder (ImageJ) 8 need a thumbnail 2D, 3D, time-series ImageJ Software … Free and open source has function Image segmentation Image thresholding Entry Curator lascholz Post date 02/25/2019 - … (Links to ImageJ documentation) … lascholz … 4004 … 4046 … Thresholding … Clustering-based image thresholding … lascholz … Image segmentation … Image …
ImageJ Threshold 8 need a thumbnail 2D ImageJ Software … features of interest and background. has function Image thresholding has topic Bioimage informatics Entry Curator … user manual … czhang … ImageJ developers … 4046 … 4155 … Thresholding … Clustering-based image thresholding … Bioimage analysis … basic_html … czhang … …
KNIME Multilevel Thresholding 8 need a thumbnail 2D, 3D, multi-channel, time-series KNIME Image Processing and Analysis Software … Free and open source Description The method to use for thresholding. Currently only OTSU is available. has function Image thresholding has topic Bioimage informatics Entry Curator … … migration.tool … 4046 … 4155 … Thresholding … Clustering-based image thresholding … Bioimage …
Mahotas / Thresholding 8 need a thumbnail 2D Mahotas Software … License/Openness Free and open source has function Image thresholding has topic Bioimage informatics Entry Curator … Download Page http://mahotas.readthedocs.org/en/latest/thresholding.html Documentation Link http://mahotas.readthedocs.org/en/latest/thresholding.html … migration.tool … Luis Pedro Coelho … 4046 …
RATS: Robust Automatic Threshold Selection 8 need a thumbnail 2D ImageJ Software … License/Openness Free and open source has function Image thresholding has topic Bioimage informatics Entry Curator … and Motil… … migration.tool … Ben Tupper … 4046 … 4155 … Thresholding … Clustering-based image thresholding … Bioimage analysis … migration … Image …
Best Threshold 8 Icy, Icy Thresholder, EzPlug SDK, Icy Protocols SDK Software … Free and open source Description Choose the best auto thresholding technique for your data.  has function Image … Publication Link Huang, L-K & Wang, M-J J (1995), "Image thresholding by minimizing the measure … … migration.tool … … … pdelgado … Image segmentation … Choose the best auto thresholding technique for your data.  … Best Threshold …
Counting foci in ImageJ 7 2D ImageJ Software
Global Thresholder (KNIME) 7 need a thumbnail 2D KNIME Image Processing and Analysis Software … License/Openness Free and open source has function Image thresholding has topic Bioimage informatics Entry Curator … … migration.tool … 4046 … 4155 … Thresholding … Clustering-based image thresholding … Bioimage analysis … migration … Image …
Filament Tracing LocThresh (ImageJ) 7 need a thumbnail 3D ImageJ Software … from 3D Gaussian blurring (user defined radius), local thresholding (user defined radius and offset) and 3D … version for BIAFLOWS, has function Filament tracing Local thresholding Skeletonisation has topic Bioimage informatics … … basic_html … lascholz … Filament tracing … Local thresholding … Skeletonisation … Bioimage informatics … Blood …
MultiThresholder (ImageJ) 7 need a thumbnail 2D, 3D ImageJ Software … License/Openness Free and open source has function Image thresholding has topic Bioimage informatics Entry Curator … … migration.tool … 4046 … 4155 … Thresholding … Clustering-based image thresholding … Bioimage analysis … migration … Image …
Auto Local Threshold 7 need a thumbnail 2D ImageJ Software … Free and open source License GPLv3 has function Image thresholding has topic Bioimage informatics Entry Curator … … migration.tool … Gabriel Landini … 4046 … 4155 … Thresholding … Clustering-based image thresholding … Bioimage analysis … migration … Image …
Microtubules Tool (3D) 7 3D microtubules 3D, multi-channel ImageJ, Fiji, Skeletonize3D, 3D Objects Counter Software … a test image here . has function Filament tracing Image thresholding has topic Bioimage informatics has biological … Step 1: Threshold the microtubules Auto Threshold Image thresholding Step 2: Get the central line by skeletonization … … neuron image analysis … neuron reconstruction … Thresholding … Clustering-based image thresholding … Bioimage …
clij2 7 2D, 3D Fiji, Icy, MATLAB Software … organoids and organisms. has function Spot detection Image thresholding Local thresholding Object counting Image deconvolution Image … 4020 … 4146 … 4198 … 4155 … 4196 … Seed point detection … Thresholding … Clustering-based image thresholding … Noise …
CellProfiler Threshold 6 need a thumbnail CellProfiler Software
QuantiFish 6 QuantiFish User Interface 2D Software … the specimen. has function Image registration Image thresholding Object counting Object detection has topic … … 4072 … 4066 … 4000 … 4003 … 4022 … Image alignment … Thresholding … Clustering-based image thresholding … Particle detection … Isolated object detection …
MiNA - Mitochondrial Network Analysis 6 example skeleton image (from https://imagej.net/plugins/mina#processing-pipeline-and-usage) 2D, 3D ImageJ Software … of the analysis. has function Image analysis Image thresholding Morphological operation Skeletonisation has … steps Step 1: segment mitochondria ImageJ Threshold Image thresholding Step 2: Extract mitochondria skeleton … … 4168 … 4040 … 4155 … 4022 … General image analysis … Thresholding … Clustering-based image thresholding … …
Local Thresholding (KNIME) 6 need a thumbnail 2D, time-series KNIME Image Processing and Analysis Software … Level Automated License/Openness I do not know Description Thresholding method The used thresholding Method: Mean, Median, Sauvola, MidGrey, Bernsen, … … migration.tool … basic_html … migration … Thresholding method The used thresholding Method: Mean, …
Arabidopsis Seedlings Tool 5 ImageJ toolbar of the arabidopsis seedlings tool 2D ImageJ Software … Test images can be found here . has function Image thresholding has topic Bioimage informatics has biological … Arabidopsis thaliana seedlings Additional keywords color thresholding Entry Curator volker Post date 10/30/2013 - … … migration.tool … 4237 … Volker Baecker … 4046 … 4155 … Thresholding … Clustering-based image thresholding … Bioimage …
Spot Detection 3D (ImageJ) 5 need a thumbnail 3D ImageJ, FeatureJ Laplacian, Analyze Particles Software
Color Picker Threshold 5 null Icy, Icy NHerve Toolbox, MaskEditor (Icy) Software … colors selection. Two versions are available : thresholding positive and negative colors selection and SVM … colors selection. Two versions are available : thresholding positive and negative colors selection and SVM …
Simple Tracing DF-Tracing 5 Simple Tracing - DT-fields 3D Vaa3D Software … a noisy image by using anisotropic filtering and automated thresholding. Then, DF-Tracing executes a coupled … function Filament tracing Image segmentation Adaptative thresholding Neuron image analysis Image enhancement Distance … … Filament tracing … Image segmentation … Adaptative thresholding … Neuron image analysis … Image enhancement … …
Measure Rosette Area Tool 5 2D ImageJ Software … ,  http://biii.eu/node/1145 has function Image thresholding has topic Bioimage informatics has biological … seedlings Additional keywords CIELAB color space color thresholding Entry Curator volker Post date 12/09/2014 - … … 4258 … 4237 … Volker Baecker … 4046 … 4155 … Thresholding … Clustering-based image thresholding … Bioimage …
Fast Multilevel Thresholded-Landweber Deconvolution Algorithm 5 3D MATLAB Software
Mahotas 5 Python, NumPy Software … are open-source. has function Image classification Image thresholding Watershed segmentation Shape features … Additional keywords haralick features numpy Otsu thresholding pixel features protein localzation slic … … 4159 … 4007 … 4353 … 4168 … 4053 … Image clustering … Thresholding … Clustering-based image thresholding … …
Quantification of outer ring diameters of centriole or PCM proteins of cycling HeLa cells in interphase 5 Combined view from Figure 1 Lawo et al. 2D, 3D, multi-channel ImageJ, R Project for Statistical Computing, Maximum Entropy Threshold (ImageJ), Analyze Particles, OMERO.insight-ij client Software … the images are read from the IDR , then process by thresholding (Maximum entropy auto thresholding with Image J), and processed by Analyze … the images are read from the IDR , then process by thresholding (Maximum entropy auto thresholding with Image …
Nuclei Segmentation (Python) 4 need a thumbnail 2D scikit-image, SciPy, NumPy Software … where nuclei are detected. has function Adaptative thresholding Watershed segmentation Object detection … smoothing … Blurring … basic_html … lascholz … Adaptative thresholding … Watershed segmentation … Object detection … …
Spot Detection Dmap (ImageJ) 4 need a thumbnail 2D ImageJ, FeatureJ Laplacian, ImageJ Built-in Macro Functions Software … the image by Laplacian of Gaussian (user defined radius), thresholding (user defined threshold) and finding local … the image by Laplacian of Gaussian (user defined radius), thresholding (user defined threshold) and finding local …
Matlab Image Processing Toolbox 4 need a thumbnail MATLAB Software … affine transformation, ...) to segmentation algorithms (thresholding, watershed, region growing). There is also an … affine transformation, ...) to segmentation algorithms (thresholding, watershed, region growing). There is also an …
MIPAV 4 2D, 3D, multi-channel, time-series Software … Object-based colocalisation Image segmentation Image thresholding Pixel classification Smoothing Image … colocalization … Object-based co-localisation … Thresholding … Clustering-based image thresholding … Pixel labeling … Voxel classification … …
EBImage thresh 4 need a thumbnail 2D Adaptive Thresholding (EBImage) Software … Type Component Author Oleg Sklyar Requires Adaptive Thresholding (EBImage) Execution Platform Linux Mac Windows … Free and open source has function Adaptative thresholding has topic Bioimage informatics Entry Curator … … 4018 … 4155 … Bioimage analysis … migration … Adaptative thresholding … Bioimage informatics … EBImage thresh …
Rivulet 2 (Rivuletpy) 4 3D SciPy, NumPy, Python, Libtiff, simpleITK, cython Software … or "Revised" License has function Filament tracing Image thresholding Neuron image analysis Distance transform has … … neuron image analysis … neuron reconstruction … Thresholding … Clustering-based image thresholding … lascholz … Filament tracing … Image …
MicrobeJ 4 need a thumbnail 2D, 3D, multi-channel ImageJ Software … image analysis solution. has function Analysis Image thresholding Object detection Object tracking Morphological … … 4772 … 4046 … 4072 … 4023 … 4168 … 4155 … 4196 … Thresholding … Clustering-based image thresholding … Particle detection … Isolated object detection …
OpenCV / Image Processing 4 2D OpenCV Software … License BSD has function Image feature detection Image thresholding Watershed segmentation Image processing … … 4352 … 4025 … 4168 … 4155 … Image feature extraction … Thresholding … Clustering-based image thresholding … Watershed transformation … Watershed-based …
Filament Tracing Tubeness (ImageJ) 4 need a thumbnail 3D ImageJ, Tubeness Software … (user defined scale), 3D opening (radius set to 2), thresholding (user defined level) and 3D skeletonization. has … (user defined scale), 3D opening (radius set to 2), thresholding (user defined level) and 3D skeletonization. … …
Semi-automated quantification of three stages of phagocytosi using ImageJ 4 2D ImageJ Software … beads (from bright field image) ImageJ Threshold Image thresholding Step 2: filter segmented objects by size (from … beads (from fluorescence image) ImageJ Threshold Image thresholding Step 4: classify according to overlap percentage …
FISHfinder 4 3D, multi-channel MATLAB Software
NET - Network Extraction Tool 4 need a thumbnail 2D Software … up the NET framework. has function Filament tracing Image thresholding Shape features has topic Digital histology has … … neuron image analysis … neuron reconstruction … Thresholding … Clustering-based image thresholding … Area … Digital pathology imaging … basic_html …
Lymphatic Vessel Density calculation 4 MATLAB, Pandore, Moment thresholding (ImageJ) Software … Balsat Nicolas Signolle Requires MATLAB Pandore Moment thresholding (ImageJ) Interaction Level Manual … as text). Vessels are obtained with a Maximum Entropy Thresholding applied on the excess Red channel (2 times the … value). Stroma tissue is obtained with a Moment Preserving Thresholding on the blue channel. has function Image …
RGB Measure Plus 4 need a thumbnail multi-channel ImageJ Software … License/Openness Free and open source has function Image thresholding has topic Bioimage informatics Entry Curator … … migration.tool … Dimiter Prodanov … 4046 … 4155 … Thresholding … Clustering-based image thresholding … Bioimage analysis … migration … Image …
ITK 4 itk 2D, 3D, multi-channel, time-series Software … Image registration Image analysis Image segmentation Image thresholding Entry Curator dscho Post date 10/15/2013 - 20:47 … … 4004 … 4046 … Image alignment … General image analysis … Thresholding … Clustering-based image thresholding … basic_html … dscho … Image registration … …
Fourier Ring Correlation 4 need a thumbnail ImageJ Software
Nuclei Segmentation 2D watershed (NucSeg3DThr-ImageJ) 4 need a thumbnail 2D, 3D ImageJ Software … nuclei in a 3D image using a 2D Gaussian blur, followed by Thresholding, 2D hole filling and a 2D watershed. As a result … Smoothing Step 2: Threshold Image ImageJ Threshold Image thresholding Step 3: Fill Holes ImageJ Binary Operations … nuclei in a 3D image using a 2D Gaussian blur, followed by Thresholding, 2D hole filling and a 2D watershed. As a result …
Wound healing assay: analysis in ImageJ 4 2D, time-series ImageJ Software … in a wound scratch assay. It uses an edge-detection and thresholding technique. It will batch process all images in a … in a wound scratch assay. It uses an edge-detection and thresholding technique. It will batch process all images in a …
TReMAP 4 Example_TReMAP_Result 3D Vaa3D Software … parameters. has function Filament tracing Image thresholding Neuron image analysis has topic Confocal … … neuron image analysis … neuron reconstruction … Thresholding … Clustering-based image thresholding … basic_html … lascholz … Filament tracing … …
Adiposoft 4 2D ImageJ Software … of the workflow. has function Cell segmentation Image thresholding Watershed segmentation has topic Digital … … Carlos Ortiz-de-Solórzano … 4083 … 4046 … 4159 … 4120 … Thresholding … Clustering-based image thresholding … Watershed transformation … Watershed-based …
Quantitative analysis of focal adhesions 4 2D ImageJ, Log3D, CLAHE Software … is not involved. has function Image segmentation Image thresholding has topic Fluorescence microscopy has biological … … Berrin Ozdil … Devrim Pesen-Okvur … 4004 … 4046 … 4022 … Thresholding … Clustering-based image thresholding … basic_html … Niko Kladt … Image segmentation … …
APP (All-path pruning) 3.965 APP_Vaa3D_example_results 2D, 3D Vaa3D Software … parameters. has function Filament tracing Image thresholding Neuron image analysis has topic Confocal … … neuron image analysis … neuron reconstruction … Thresholding … Clustering-based image thresholding … basic_html … lascholz … Filament tracing … …
Quantifying staining in tissue sections 3.821 2D ImageJ, Colour Deconvolution Software
Icy HK-Means 3 need a thumbnail Icy Thresholder, Spot detection utilities, Connected Components, EzPlug SDK, Filter Toolbox (Icy), Icy Protocols SDK Software … Description This segmentation method performs a N-class thresholding based on a K-Means classification of the image … microscopy … This segmentation method performs a N-class thresholding based on a K-Means classification of the image …
NeuriteTracer 3 2D ImageJ Software
Otsu Thresholding 3 need a thumbnail ImageJ, Histogram Software … 09/13/2017 - 12:05 Download Page http://fiji.sc/Otsu_Thresholding … migration.tool … migration … Otsu Thresholding …
Filament Tracing (ImageJ) 3 need a thumbnail 3D ImageJ Software … Step 2: Run image Threshold Auto Threshold Image thresholding Step 3: Skeletonize binary image Skeletonize3D …
Nuclei Segmentation (CellProfiler) 3 2D CellProfiler Software … input image CellProfiler Smooth Smoothing Step 2: Thresholding input image CellProfiler Threshold Image thresholding Step 3: Run LoG on input image CellProfiler …
Using ImageJ to Analyze the Size, Shape, and Directionality of Networks of Coupled Astrocytes 2.931 need a thumbnail 3D Fiji Software
Microtubule Length Analysis 2.811 need a thumbnail 2D, 3D Fiji, Tubeness Software … Tubeness Image enhancement Step 2: Segmenting tubules Otsu Thresholding Image segmentation Step 3: interactive …
Find, Draw and Measure Wells in a Multi-Well Plate Picture 2 2D ImageJ Software
JACoP 2 example of partial colocalisation from reference publication 2D, 3D, multi-channel, time-series ImageJ Software
Volume Viewer 2 3D ImageJ, Fiji Software
VolViewer 2 VolViewer screenshot 3D Viewer Software … for up to three data channels. * Real-time per channel thresholding, brightness and contrast operators. * On-the-fly … for up to three data channels. * Real-time per channel thresholding, brightness and contrast operators. * On-the-fly …
spot detection and codistribution analysis 2 endosomes and spot neighbors 2D, multi-channel ImageJ, MATLAB Software
DNA MicroArray Image Processing Case Study 2 2D MATLAB, Matlab Image Processing Toolbox, MATLAB Signal Processing Toolbox Software … Each spot was individually addressed and segmented by thresholding to form a mask. The mask was used to isolate … Each spot was individually addressed and segmented by thresholding to form a mask. The mask was used to isolate …
Interactive watershed 2 2D, 3D Fiji Software
Object Classification using ilastik 2 2D, 3D, multi-channel, time-series VIGRA, ilastik Software
MATLAB Image Segmentation Tutorial 2 2D MATLAB, Matlab Image Processing Toolbox Software … pick out objects of certain sizes. The basic concepts of thresholding, labeling, and regionprops are demonstrated with … pick out objects of certain sizes. The basic concepts of thresholding, labeling, and regionprops are demonstrated with …
Dithering 2 2D ImageJ Software … open source Description Dithering is a type of half tone thresholding where greyscale (or RGB channel) intensity is … … Bioimage informatics … Dithering is a type of half tone thresholding where greyscale (or RGB channel) intensity is …
3D Objects Counter 2 need a thumbnail 3D Fiji, ImageJ Software … image. But unlike the Analyze particle, it include a thresholding option, meaning that you can start from a gray … image. But unlike the Analyze particle, it include a thresholding option, meaning that you can start from a gray …
Image denoising using Matlab 2 2D, 3D, time-series MATLAB Software … noise you can try this simple filter. It is based on thresholding in the DCT domain and is usually vastly superior … noise you can try this simple filter. It is based on thresholding in the DCT domain and is usually vastly superior …
Coloc 2 2 2D Fiji Software … ,  Li  and more, for scatterplots, analysis, automatic thresholding and statistical significance testing. Coloc 2 … ,  Li  and more, for scatterplots, analysis, automatic thresholding and statistical significance testing. Coloc 2 …
Columbus Image Data Storage and Analysis System 2 Columbus screenshot Software
Nuclei Segmentation (ilastik) 2 need a thumbnail 2D ilastik, scikit-image, SciPy, NumPy Software … probability map to produce binary mask scikit-image Image thresholding Step 3: Produce Euclidean distance map …
Object Tracking (ImageJ) 2 need a thumbnail 2D, time-series ImageJ Software … is obtained from median filtering (user defined radius), thresholding (user defined level) and hole filling. Convex … is obtained from median filtering (user defined radius), thresholding (user defined level) and hole filling. Convex …
Relate 2 Relate analysis workflow example 2D, 3D, multi-channel Software … data across multiple layers Analyse areas via data thresholding using amount of x-ray counts, phase maps, … data across multiple layers Analyse areas via data thresholding using amount of x-ray counts, phase maps, …
ImmunoRatio 2 2D ImageJ, Colour Deconvolution Software … correction equation . Ultimately ImmunoRatio relies on thresholding (color deconvolved [bib]2451[/bib]) images to … correction equation . Ultimately ImmunoRatio relies on thresholding (color deconvolved [bib]2451[/bib]) images to …
SURE-LET Wavelet Denoising 2 need a thumbnail 2D, multi-channel MATLAB Software … This package implements the interscale orthonormal wavelet thresholding algorithm based on the SURE-LET principle. A … This package implements the interscale orthonormal wavelet thresholding algorithm based on the SURE-LET principle. A …
Nuclei Tracking (ImageJ) 2 need a thumbnail 3D, time-series ImageJ Software
3D object based colocalization using KNIME 2 3D KNIME Image Processing and Analysis Software … 3D data stacks to segment the spots first, using local thresholding with subsequent morphological operations in … 3D data stacks to segment the spots first, using local thresholding with subsequent morphological operations in …
Icy Fill Holes 2D 2 need a thumbnail 2D, 3D Software
CEM 2 Myelin 2D, 3D, multi-channel ImageJ Software
Nuclei Segmentation 2D (ImageJ) 2 need a thumbnail 2D ImageJ Software
Neuron Tracing 3D (ImageJ) 2 need a thumbnail 3D ImageJ Software
ICY batch pixel density measurement 2 2D Software
Definiens Developer 2 need a thumbnail Software … processing workflow by combining built-in filtering, thresholding and object classification modules. Object … processing workflow by combining built-in filtering, thresholding and object classification modules. Object …
Matlab Computer Vision System Toolbox 2 need a thumbnail MATLAB, Optical Flow, Object Tracking and Metadata Management Software
ImageJ Bandpass filter 1.977 ImageJ bandpass screenshot 2D ImageJ Software … transform. Such filtering can be useful prior to global thresholding, for noise suppression, etc. has function … transform. Such filtering can be useful prior to global thresholding, for noise suppression, etc. … ImageJ Bandpass …
QuimP 1.935 Screenshot 2D, multi-channel, time-series Software
VIGRA 1.558 2D, 3D, multi-channel, time-series Software … operations, gamma correction, contrast adaptation, thresholding), arbitrary regions of interest using mask … operations, gamma correction, contrast adaptation, thresholding), arbitrary regions of interest using mask …
ZEN and APEER Machine Learning Platform 1 2D, 3D, multi-channel, time-series arivis Vision4D, ZEN Blue, APEER Software
Fit a model for the growth of yeast cells 1 2D, multi-channel, time-series EBImage, rOMERO-gateway Software
Nuclei Segmentation 3D Watershed (NucleiSegmentation3D-ImageJ) 1 need a thumbnail 3D ImageJ Software
Spot Detection 3D (Icy) 1 need a thumbnail 3D Icy Software
bleb dynamics 1 need a thumbnail 2D, multi-channel, time-series Gaussian blur in ImageJ, Otsu Thresholding, radial reslice, kymograph generation Software … Maurin Mathieu Requires Gaussian blur in ImageJ Otsu Thresholding radial reslice kymograph generation Execution …
Analyze Complex Roots Tool 0.913 Concentric circles on the mask of a root, created by the Analyze Complex Roots Tool 2D Fiji Software
Content type:
Relevance requires Content type Excerpt
6 … Image thresholding Synonyms Thresholding Clustering-based image thresholding … Image thresholding …
4 … Local thresholding Concrete algorithm? … Local thresholding …
4 … … Adaptative thresholding …
4 … Otsu thresholding … Otsu thresholding …
4 … local thresholding … local thresholding …
4 … moment thresholding … moment thresholding …
4 … color thresholding … color thresholding …
Content type: Training Material
Relevance requires Content type Excerpt
Introduction to Image Segmentation 2 Training Material … ImageJ, GUI training for beginners. segmentation intro, thresholding, morphological segmentation 215 views Tool(s) … … ImageJ, GUI training for beginners. segmentation intro, thresholding, morphological segmentation … Introduction to …
Image Analysis of Biological Data using CellProfiler 1 Training Material