OpenComet
Type
Requires
Programming Language
Supported image dimension
Interaction Level
License/Openness
Description
This workflow will batch process a directory of images: - comets should be horizontally oriented, tails to the right. Additional preprocessing is required if the gel does not match with this orientation (Rotate images, Using ImageJ/Transform Image or TransformJ plugin for example). Then using the plugin:
- Uneven background correction
- Automatic detection of comet shapes with outliers detection
- Automatic detection of theĀ heads of cometsĀ (brightest region or profile analysis)
- Statistical values of tails, heads and Olive moments.
Manual correction is also available Can be run from Micro-Manager for live analysis.
has biological terms
Additional keywords
Entry Curator
Post date
03/09/2015 - 14:42
Last modified
05/03/2018 - 22:49