Digital histology

Synonyms
Digital pathology imaging
Description

BioImage.IO -- a collaborative effort to bring AI models to the bioimaging community. 

  • Integrated with Fiji, ilastik, ImJoy and more
  • Try model instantly with BioEngine
  • Contribute your models via Github

This is a database of pretrained deep Learning models. 

need a thumbnail
Description

Dragonfly is a software platform for the intuitive inspection of multi-scale multi-modality image data. Its user-friendly experience translates into powerful quantitative findings with high-impact visuals, driven by nuanced easy-to-learn controls.

For segmentation: It provides an engine fior machine Learning, Watershed and superpixel methods, support histological data .

It offers a 3D viewer, and python scripting capacities .

It is free for reserach use, but not for commercial usage.

DragonFly
Description

CRImage a package to classify cells and calculate tumour cellularity

CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.

has function
Description

AssayScope is an intuitive application dedicated to large scale image processing and data analysis. It is meant for histology, cell culture (2D, 3D, 2D+t) and phenotypic analysis. 

need a thumbnail
Description

A deep-learning solution for stain color normalization in digital histology images

has function
need a thumbnail